miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11400 5' -47 NC_003084.1 + 95040 0.66 0.999318
Target:  5'- gCUAACGCUGCuGCAGGUcgaGUA-CgUGGa -3'
miRNA:   3'- -GAUUGCGACG-UGUUUAa--CAUgGgACC- -5'
11400 5' -47 NC_003084.1 + 48424 0.66 0.999152
Target:  5'- -gAGCGCccgggGCgggaaauacauGCGAAUUGUGCCCUc- -3'
miRNA:   3'- gaUUGCGa----CG-----------UGUUUAACAUGGGAcc -5'
11400 5' -47 NC_003084.1 + 5556 0.66 0.999152
Target:  5'- -gGGCGCUGUAgagcucaccCGAGUUGUACUucuuUUGGu -3'
miRNA:   3'- gaUUGCGACGU---------GUUUAACAUGG----GACC- -5'
11400 5' -47 NC_003084.1 + 61489 0.67 0.99843
Target:  5'- -gGAUGCccUGCAAAUUGUGCCCggcGGu -3'
miRNA:   3'- gaUUGCGacGUGUUUAACAUGGGa--CC- -5'
11400 5' -47 NC_003084.1 + 81823 0.67 0.997246
Target:  5'- -cGGCGCUGCACAu----UGCCCa-- -3'
miRNA:   3'- gaUUGCGACGUGUuuaacAUGGGacc -5'
11400 5' -47 NC_003084.1 + 64818 0.67 0.997246
Target:  5'- -aAACGUUGCAgCAAGUg--GCCCcgUGGa -3'
miRNA:   3'- gaUUGCGACGU-GUUUAacaUGGG--ACC- -5'
11400 5' -47 NC_003084.1 + 36112 0.68 0.995399
Target:  5'- -cAACG-UGCACAAA-UGUACCCg-- -3'
miRNA:   3'- gaUUGCgACGUGUUUaACAUGGGacc -5'
11400 5' -47 NC_003084.1 + 3525 0.68 0.994596
Target:  5'- -cAACGgUGCACcaccggugguuaAAGUUGUGCCCa-- -3'
miRNA:   3'- gaUUGCgACGUG------------UUUAACAUGGGacc -5'
11400 5' -47 NC_003084.1 + 92219 0.69 0.99265
Target:  5'- aCUGAaggGUaaaagUGCACGAGUUGUGCgugaCCUGGu -3'
miRNA:   3'- -GAUUg--CG-----ACGUGUUUAACAUG----GGACC- -5'
11400 5' -47 NC_003084.1 + 33908 0.69 0.991486
Target:  5'- cCUAACGgUGCccACGAGUaUGgGCUCUGGa -3'
miRNA:   3'- -GAUUGCgACG--UGUUUA-ACaUGGGACC- -5'
11400 5' -47 NC_003084.1 + 11945 0.69 0.991486
Target:  5'- uCUGuUGCUGCGCAAAU-GU-CCaCUGGc -3'
miRNA:   3'- -GAUuGCGACGUGUUUAaCAuGG-GACC- -5'
11400 5' -47 NC_003084.1 + 44737 0.69 0.990182
Target:  5'- gUAuCGCUGCACAAAUUcgaGUACCgcguuaugaucUUGGa -3'
miRNA:   3'- gAUuGCGACGUGUUUAA---CAUGG-----------GACC- -5'
11400 5' -47 NC_003084.1 + 47504 0.7 0.986937
Target:  5'- gUGGCGCUGCACuuuGGUucccgUGUcagugcgGCCCUGu -3'
miRNA:   3'- gAUUGCGACGUGu--UUA-----ACA-------UGGGACc -5'
11400 5' -47 NC_003084.1 + 53349 0.7 0.985317
Target:  5'- ----aGCUGCGCAGAgUGUuuGCCCaGGc -3'
miRNA:   3'- gauugCGACGUGUUUaACA--UGGGaCC- -5'
11400 5' -47 NC_003084.1 + 52816 0.7 0.978548
Target:  5'- aCUAugGCcgcuauaUGCGCAu-UUGUACCC-GGa -3'
miRNA:   3'- -GAUugCG-------ACGUGUuuAACAUGGGaCC- -5'
11400 5' -47 NC_003084.1 + 52748 0.71 0.967056
Target:  5'- ---uCGgUGCACGAGUgGU-CCCUGGg -3'
miRNA:   3'- gauuGCgACGUGUUUAaCAuGGGACC- -5'
11400 5' -47 NC_003084.1 + 4251 0.71 0.963516
Target:  5'- gUGAUGggGUACAAGUUGgGCUCUGGu -3'
miRNA:   3'- gAUUGCgaCGUGUUUAACaUGGGACC- -5'
11400 5' -47 NC_003084.1 + 98689 0.72 0.955659
Target:  5'- uUAACGCUGCGCugcGAAUUGccauUGCgUUGGg -3'
miRNA:   3'- gAUUGCGACGUG---UUUAAC----AUGgGACC- -5'
11400 5' -47 NC_003084.1 + 34141 0.73 0.9255
Target:  5'- --uACGCUcucgagGCGCAAAUUcGUACCaCUGGa -3'
miRNA:   3'- gauUGCGA------CGUGUUUAA-CAUGG-GACC- -5'
11400 5' -47 NC_003084.1 + 100239 1.13 0.008587
Target:  5'- cCUAACGCUGCACAAAUUGUACCCUGGa -3'
miRNA:   3'- -GAUUGCGACGUGUUUAACAUGGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.