miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11401 5' -53.1 NC_003084.1 + 46096 0.66 0.939349
Target:  5'- uUCGGUGCacaaccaggaccgcgAGUCUAGC--UGGGCUCAa -3'
miRNA:   3'- cAGCCACG---------------UCGGGUUGcaAUUCGAGU- -5'
11401 5' -53.1 NC_003084.1 + 70419 0.66 0.937331
Target:  5'- -cUGGUGCgAGUCC--CGUUcGAGCUCAa -3'
miRNA:   3'- caGCCACG-UCGGGuuGCAA-UUCGAGU- -5'
11401 5' -53.1 NC_003084.1 + 17746 0.66 0.937331
Target:  5'- aUCGGUcCAGCCCGuGCGguugaucAAGUUCAa -3'
miRNA:   3'- cAGCCAcGUCGGGU-UGCaa-----UUCGAGU- -5'
11401 5' -53.1 NC_003084.1 + 52600 0.66 0.932102
Target:  5'- uUCGGUGguGaCUCAAgGUgUGAGCUUc -3'
miRNA:   3'- cAGCCACguC-GGGUUgCA-AUUCGAGu -5'
11401 5' -53.1 NC_003084.1 + 31269 0.66 0.914819
Target:  5'- uUCGGUGCAGCuCCcACuggUGGGgUCGa -3'
miRNA:   3'- cAGCCACGUCG-GGuUGca-AUUCgAGU- -5'
11401 5' -53.1 NC_003084.1 + 46730 0.67 0.901973
Target:  5'- aGUCGGUGCcccGGUCCAcCGUuugUGGGUUUg -3'
miRNA:   3'- -CAGCCACG---UCGGGUuGCA---AUUCGAGu -5'
11401 5' -53.1 NC_003084.1 + 12116 0.67 0.880024
Target:  5'- -aUGGUGCGGCCCGaaauggaaccuucACGgcgcuuuAGCUCc -3'
miRNA:   3'- caGCCACGUCGGGU-------------UGCaau----UCGAGu -5'
11401 5' -53.1 NC_003084.1 + 65848 0.68 0.849086
Target:  5'- --aGGUGCAcccGCCCGACGgguuAGCUg- -3'
miRNA:   3'- cagCCACGU---CGGGUUGCaau-UCGAgu -5'
11401 5' -53.1 NC_003084.1 + 59197 0.68 0.848247
Target:  5'- uUCGGccacagcUGgGGCCCGG-GUUGGGCUCGa -3'
miRNA:   3'- cAGCC-------ACgUCGGGUUgCAAUUCGAGU- -5'
11401 5' -53.1 NC_003084.1 + 103840 0.68 0.831901
Target:  5'- uUUGG-GCAGCCCGG-GUgGAGCUCc -3'
miRNA:   3'- cAGCCaCGUCGGGUUgCAaUUCGAGu -5'
11401 5' -53.1 NC_003084.1 + 95061 0.69 0.795178
Target:  5'- -cCGGUgGUGGCCCu-CGUgGGGCUCAa -3'
miRNA:   3'- caGCCA-CGUCGGGuuGCAaUUCGAGU- -5'
11401 5' -53.1 NC_003084.1 + 47527 0.69 0.785562
Target:  5'- uGUCaGUGCGGCCCuguuuCGUUGGG-UCAu -3'
miRNA:   3'- -CAGcCACGUCGGGuu---GCAAUUCgAGU- -5'
11401 5' -53.1 NC_003084.1 + 61161 0.7 0.735394
Target:  5'- cUCGGUGCA-CCCAACuUUGAGUUUu -3'
miRNA:   3'- cAGCCACGUcGGGUUGcAAUUCGAGu -5'
11401 5' -53.1 NC_003084.1 + 61466 0.71 0.704007
Target:  5'- -gCGGUGCGGCCaaccCGU--GGCUCAc -3'
miRNA:   3'- caGCCACGUCGGguu-GCAauUCGAGU- -5'
11401 5' -53.1 NC_003084.1 + 13366 0.76 0.423638
Target:  5'- uUCGGUGCGGCCCu-CG---AGCUCAc -3'
miRNA:   3'- cAGCCACGUCGGGuuGCaauUCGAGU- -5'
11401 5' -53.1 NC_003084.1 + 18085 0.76 0.414376
Target:  5'- uUCGGUGCAGCCgGugGCGUUGGGUg-- -3'
miRNA:   3'- cAGCCACGUCGGgU--UGCAAUUCGagu -5'
11401 5' -53.1 NC_003084.1 + 102667 1.08 0.003526
Target:  5'- uGUCGGUGCAGCCCAACGUUAAGCUCAu -3'
miRNA:   3'- -CAGCCACGUCGGGUUGCAAUUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.