miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11402 3' -42.2 NC_003084.1 + 82124 0.66 1
Target:  5'- -uGUGuuGCUGUcggcACAAGcacUGUACGCa -3'
miRNA:   3'- cuUAUggCGACA----UGUUCaa-AUAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 21420 0.66 1
Target:  5'- uAGUGCCGC-GUA-AAG-UUAUACGCg -3'
miRNA:   3'- cUUAUGGCGaCAUgUUCaAAUAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 43294 0.66 1
Target:  5'- -cAUACCGCUGcGCAGaacUUGUAuCACg -3'
miRNA:   3'- cuUAUGGCGACaUGUUca-AAUAU-GUG- -5'
11402 3' -42.2 NC_003084.1 + 3317 0.66 1
Target:  5'- uGGUGCUGCUGcUGCugccGUUUAUGCuGCu -3'
miRNA:   3'- cUUAUGGCGAC-AUGuu--CAAAUAUG-UG- -5'
11402 3' -42.2 NC_003084.1 + 46451 0.66 1
Target:  5'- cGAUAgCGC-GUACcAGUUgGUGCGCg -3'
miRNA:   3'- cUUAUgGCGaCAUGuUCAAaUAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 43148 0.66 1
Target:  5'- cAGUACCGUuucgUGaUACAAGUUc-UGCGCa -3'
miRNA:   3'- cUUAUGGCG----AC-AUGUUCAAauAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 88533 0.67 0.999999
Target:  5'- cGAggACCGgUGUGCAug---GUACGCa -3'
miRNA:   3'- -CUuaUGGCgACAUGUucaaaUAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 3247 0.67 0.999998
Target:  5'- --uUGCCGCacauUGUACAccUUUAUAUACu -3'
miRNA:   3'- cuuAUGGCG----ACAUGUucAAAUAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 49775 0.67 0.999998
Target:  5'- -uGUACCGCaaccCAAGUUgGUACACc -3'
miRNA:   3'- cuUAUGGCGacauGUUCAAaUAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 101903 0.67 0.999997
Target:  5'- --uUugCGCUGaACGAGcgagGUGCGCa -3'
miRNA:   3'- cuuAugGCGACaUGUUCaaa-UAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 10578 0.68 0.999994
Target:  5'- --cUugUGCuUGUGCAGGUUguuggGCACa -3'
miRNA:   3'- cuuAugGCG-ACAUGUUCAAaua--UGUG- -5'
11402 3' -42.2 NC_003084.1 + 24213 0.68 0.999994
Target:  5'- cGAAUcaACUGCUGUGCGAGcaggUUacGUGCGa -3'
miRNA:   3'- -CUUA--UGGCGACAUGUUCa---AA--UAUGUg -5'
11402 3' -42.2 NC_003084.1 + 79161 0.68 0.999992
Target:  5'- ---aGCUGCUGUcgguccACAGGUUgugcuUGCGCa -3'
miRNA:   3'- cuuaUGGCGACA------UGUUCAAau---AUGUG- -5'
11402 3' -42.2 NC_003084.1 + 102136 0.68 0.99999
Target:  5'- cGAUACCGCUgguugagccggacaaGUACGAGUg-GUACGa -3'
miRNA:   3'- cUUAUGGCGA---------------CAUGUUCAaaUAUGUg -5'
11402 3' -42.2 NC_003084.1 + 77150 0.68 0.999988
Target:  5'- --uUugCGCUGUGCuGAGacgGUACGCc -3'
miRNA:   3'- cuuAugGCGACAUG-UUCaaaUAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 75878 0.69 0.999967
Target:  5'- -cGUGCCGCgaaACGAGU--AUGCACu -3'
miRNA:   3'- cuUAUGGCGacaUGUUCAaaUAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 17166 0.69 0.999967
Target:  5'- uGAAU-CCGCUGUGCGuagcguUACGCu -3'
miRNA:   3'- -CUUAuGGCGACAUGUucaaauAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 95245 0.69 0.999955
Target:  5'- ---aGCCGCcGUACAGGUagccaaagccGUGCACa -3'
miRNA:   3'- cuuaUGGCGaCAUGUUCAaa--------UAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 54661 0.7 0.999926
Target:  5'- -cGUACCGCUcGUACGGGUccacUUucaaauuuguaccucGUGCACa -3'
miRNA:   3'- cuUAUGGCGA-CAUGUUCA----AA---------------UAUGUG- -5'
11402 3' -42.2 NC_003084.1 + 63750 0.7 0.999916
Target:  5'- cGGAUGCCGCUucuuguGGUUcuUGUACACg -3'
miRNA:   3'- -CUUAUGGCGAcaugu-UCAA--AUAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.