miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 42366 0.66 0.557897
Target:  5'- cGCUCGCgCaUGC-CcUCGGCGGCaugaGCg -3'
miRNA:   3'- -CGAGCGgG-ACGuGaAGCUGCCGg---UGg -5'
11403 3' -58.1 NC_003085.1 + 23228 0.66 0.526337
Target:  5'- uGCUCcagacgGCCgCcGCGCUUCGcacCGcGCCGCCc -3'
miRNA:   3'- -CGAG------CGG-GaCGUGAAGCu--GC-CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 31218 0.66 0.526337
Target:  5'- -aUCGCCUcGgACaUCGGCGuGUCGCCu -3'
miRNA:   3'- cgAGCGGGaCgUGaAGCUGC-CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 7292 0.66 0.534692
Target:  5'- cGC-CGCCaaGCucgacgggaaguCUcCGACGGCCAUCg -3'
miRNA:   3'- -CGaGCGGgaCGu-----------GAaGCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 8915 0.66 0.536789
Target:  5'- ---gGCCUUGCGCcUCGAC-GCCuCCg -3'
miRNA:   3'- cgagCGGGACGUGaAGCUGcCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 34259 0.66 0.54731
Target:  5'- cCUCGCCCUuCACaggGACGuagcaGCCGCCc -3'
miRNA:   3'- cGAGCGGGAcGUGaagCUGC-----CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 2310 0.66 0.557897
Target:  5'- cGCUgGCC-UGC-C-UCGccacCGGCCGCCg -3'
miRNA:   3'- -CGAgCGGgACGuGaAGCu---GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40537 0.66 0.568541
Target:  5'- --aCGCgCUGCACUUCGGaGGCguCg -3'
miRNA:   3'- cgaGCGgGACGUGAAGCUgCCGguGg -5'
11403 3' -58.1 NC_003085.1 + 37266 0.66 0.557897
Target:  5'- aGUUCGCCgggaaGCGC-UCGACGucgcCCACCu -3'
miRNA:   3'- -CGAGCGGga---CGUGaAGCUGCc---GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40608 0.66 0.526337
Target:  5'- gGCgaggGgCCUGUGCU--GACGGCCGCUg -3'
miRNA:   3'- -CGag--CgGGACGUGAagCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 38293 0.66 0.526337
Target:  5'- aGCUCggGCUUUGC-CUgUGACGGCCAg- -3'
miRNA:   3'- -CGAG--CGGGACGuGAaGCUGCCGGUgg -5'
11403 3' -58.1 NC_003085.1 + 46692 0.66 0.515964
Target:  5'- cGC-CGCCgCUGCcuGCUUC--CGGCCAgCg -3'
miRNA:   3'- -CGaGCGG-GACG--UGAAGcuGCCGGUgG- -5'
11403 3' -58.1 NC_003085.1 + 35828 0.66 0.536789
Target:  5'- uGCUCGCCgaGCGCcugCGACucagucguGCC-CCa -3'
miRNA:   3'- -CGAGCGGgaCGUGaa-GCUGc-------CGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 27864 0.66 0.547311
Target:  5'- cGCUCGCgCCacGCAUgaUGuCGGCCAUg -3'
miRNA:   3'- -CGAGCG-GGa-CGUGaaGCuGCCGGUGg -5'
11403 3' -58.1 NC_003085.1 + 11280 0.66 0.572813
Target:  5'- uGC-CGCcagcccaggggaacaCCUGCGCcgCGGCGgggagcGCCACCa -3'
miRNA:   3'- -CGaGCG---------------GGACGUGaaGCUGC------CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40979 0.66 0.547311
Target:  5'- gGCggGCCa-GCGCcUCGGCGGCCuuCu -3'
miRNA:   3'- -CGagCGGgaCGUGaAGCUGCCGGugG- -5'
11403 3' -58.1 NC_003085.1 + 27207 0.66 0.536789
Target:  5'- aCUCGgCCUGCugccgcucCUUCGucucguUGGCCugCg -3'
miRNA:   3'- cGAGCgGGACGu-------GAAGCu-----GCCGGugG- -5'
11403 3' -58.1 NC_003085.1 + 43181 0.66 0.557897
Target:  5'- cGCUccacCGCCgCgcgGUACUUCG-CGGCguCCu -3'
miRNA:   3'- -CGA----GCGG-Ga--CGUGAAGCuGCCGguGG- -5'
11403 3' -58.1 NC_003085.1 + 8787 0.66 0.547311
Target:  5'- -gUCcCCCUGCGC--CGGCGGCU-CCg -3'
miRNA:   3'- cgAGcGGGACGUGaaGCUGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 17030 0.66 0.513899
Target:  5'- uGCUCGCguaugacgccaaccuCCggaGCUUCGAgggcgucgagaaguaCGGCCGCCc -3'
miRNA:   3'- -CGAGCG---------------GGacgUGAAGCU---------------GCCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.