miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 662 0.69 0.355984
Target:  5'- aGCacCGCCC-GgACgUCGcCGGCCACCu -3'
miRNA:   3'- -CGa-GCGGGaCgUGaAGCuGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 1504 0.72 0.234215
Target:  5'- cCUCGgCCggUGCGCcUC-ACGGCCGCCa -3'
miRNA:   3'- cGAGCgGG--ACGUGaAGcUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 2310 0.66 0.557897
Target:  5'- cGCUgGCC-UGC-C-UCGccacCGGCCGCCg -3'
miRNA:   3'- -CGAgCGGgACGuGaAGCu---GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 3428 0.7 0.347715
Target:  5'- -aUCGCgCCUGCuggagaACUUCGAgcaGGCgACCa -3'
miRNA:   3'- cgAGCG-GGACG------UGAAGCUg--CCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 3848 0.68 0.432615
Target:  5'- --cUGCCCauccaggaccacgGCGCgUCGACGGCgCGCCc -3'
miRNA:   3'- cgaGCGGGa------------CGUGaAGCUGCCG-GUGG- -5'
11403 3' -58.1 NC_003085.1 + 4685 0.66 0.526338
Target:  5'- --gCGCCgagUUGCGCcucgUCGGCGGaCUACCu -3'
miRNA:   3'- cgaGCGG---GACGUGa---AGCUGCC-GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 5644 0.71 0.265924
Target:  5'- cGCUCGCCCUGUgACUUgCG-CGagcGCCGCg -3'
miRNA:   3'- -CGAGCGGGACG-UGAA-GCuGC---CGGUGg -5'
11403 3' -58.1 NC_003085.1 + 5832 0.67 0.485366
Target:  5'- gGCgucaGCCCUGCagguccgggACUggGACGG-CACCg -3'
miRNA:   3'- -CGag--CGGGACG---------UGAagCUGCCgGUGG- -5'
11403 3' -58.1 NC_003085.1 + 5849 0.7 0.316028
Target:  5'- uGCcCGCUCUGCACUcggGAUGGCagCGCCu -3'
miRNA:   3'- -CGaGCGGGACGUGAag-CUGCCG--GUGG- -5'
11403 3' -58.1 NC_003085.1 + 6707 0.69 0.36439
Target:  5'- gGC-CGCCCUGCAC--CGcACccauGCCGCCg -3'
miRNA:   3'- -CGaGCGGGACGUGaaGC-UGc---CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 6915 0.69 0.355984
Target:  5'- cCUCGCCCgcGCGCUggccgaggCGAagcgggaGGCCACg -3'
miRNA:   3'- cGAGCGGGa-CGUGAa-------GCUg------CCGGUGg -5'
11403 3' -58.1 NC_003085.1 + 7292 0.66 0.534692
Target:  5'- cGC-CGCCaaGCucgacgggaaguCUcCGACGGCCAUCg -3'
miRNA:   3'- -CGaGCGGgaCGu-----------GAaGCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 8179 0.67 0.502604
Target:  5'- uGCUUGCgCaGCGCUucggcgucucggugUCGACGGUCGaauCCa -3'
miRNA:   3'- -CGAGCGgGaCGUGA--------------AGCUGCCGGU---GG- -5'
11403 3' -58.1 NC_003085.1 + 8787 0.66 0.547311
Target:  5'- -gUCcCCCUGCGC--CGGCGGCU-CCg -3'
miRNA:   3'- cgAGcGGGACGUGaaGCUGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 8873 0.69 0.36439
Target:  5'- cCUCGCCCggucggcaaugcUGCACUUgGgguccaccGCGGCCgucACCg -3'
miRNA:   3'- cGAGCGGG------------ACGUGAAgC--------UGCCGG---UGG- -5'
11403 3' -58.1 NC_003085.1 + 8915 0.66 0.536789
Target:  5'- ---gGCCUUGCGCcUCGAC-GCCuCCg -3'
miRNA:   3'- cgagCGGGACGUGaAGCUGcCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 9649 0.73 0.200422
Target:  5'- uGgUgGCCCUGUgaagAUUggGACGGCCGCCa -3'
miRNA:   3'- -CgAgCGGGACG----UGAagCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 11280 0.66 0.572813
Target:  5'- uGC-CGCcagcccaggggaacaCCUGCGCcgCGGCGgggagcGCCACCa -3'
miRNA:   3'- -CGaGCG---------------GGACGUGaaGCUGC------CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 12040 0.69 0.399363
Target:  5'- cGCUCGCUagccGCACUggCGcauCGGUCACUa -3'
miRNA:   3'- -CGAGCGGga--CGUGAa-GCu--GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 12226 0.7 0.316028
Target:  5'- cGCcUGCCUUgaGCGCggCGGCugGGCCGCCa -3'
miRNA:   3'- -CGaGCGGGA--CGUGaaGCUG--CCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.