miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 47509 0.67 0.455659
Target:  5'- uGUcCGCCaCUGCGau---ACGGCCACCg -3'
miRNA:   3'- -CGaGCGG-GACGUgaagcUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 37134 0.69 0.372932
Target:  5'- --aCGCCggGCACggCGACGGCgggCACCc -3'
miRNA:   3'- cgaGCGGgaCGUGaaGCUGCCG---GUGG- -5'
11403 3' -58.1 NC_003085.1 + 14946 0.69 0.39042
Target:  5'- aCUCGCggaaCUGCGCgaagCGcuGCGGcCCACCu -3'
miRNA:   3'- cGAGCGg---GACGUGaa--GC--UGCC-GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 47720 0.69 0.396666
Target:  5'- uGCUgCGCCUgcugacgggcgcggUGCGCguagcgucgcaaUUCGACGGCCAg- -3'
miRNA:   3'- -CGA-GCGGG--------------ACGUG------------AAGCUGCCGGUgg -5'
11403 3' -58.1 NC_003085.1 + 21616 0.68 0.426961
Target:  5'- cGCgagCGaCCC-GCGCga-GACGGCCAUg -3'
miRNA:   3'- -CGa--GC-GGGaCGUGaagCUGCCGGUGg -5'
11403 3' -58.1 NC_003085.1 + 3848 0.68 0.432615
Target:  5'- --cUGCCCauccaggaccacgGCGCgUCGACGGCgCGCCc -3'
miRNA:   3'- cgaGCGGGa------------CGUGaAGCUGCCG-GUGG- -5'
11403 3' -58.1 NC_003085.1 + 38221 0.68 0.445976
Target:  5'- gGCUCGUgcaCUcucgacggcaGCACgUCGGCGGUgGCCa -3'
miRNA:   3'- -CGAGCGg--GA----------CGUGaAGCUGCCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 47445 0.67 0.455659
Target:  5'- uGCUCcauGUCCUGCGCgucgaagUCGAacCGGuCCGCg -3'
miRNA:   3'- -CGAG---CGGGACGUGa------AGCU--GCC-GGUGg -5'
11403 3' -58.1 NC_003085.1 + 37842 0.67 0.455659
Target:  5'- cCUUGCCCUgguaGCGCUgccugCGcUGGCCgGCCa -3'
miRNA:   3'- cGAGCGGGA----CGUGAa----GCuGCCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 6707 0.69 0.36439
Target:  5'- gGC-CGCCCUGCAC--CGcACccauGCCGCCg -3'
miRNA:   3'- -CGaGCGGGACGUGaaGC-UGc---CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 662 0.69 0.355984
Target:  5'- aGCacCGCCC-GgACgUCGcCGGCCACCu -3'
miRNA:   3'- -CGa-GCGGGaCgUGaAGCuGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 3428 0.7 0.347715
Target:  5'- -aUCGCgCCUGCuggagaACUUCGAgcaGGCgACCa -3'
miRNA:   3'- cgAGCG-GGACG------UGAAGCUg--CCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 28718 0.77 0.120052
Target:  5'- cGCUgGCCCUGCGCUUCGGCuuccGUgagacgCACCg -3'
miRNA:   3'- -CGAgCGGGACGUGAAGCUGc---CG------GUGG- -5'
11403 3' -58.1 NC_003085.1 + 9649 0.73 0.200422
Target:  5'- uGgUgGCCCUGUgaagAUUggGACGGCCGCCa -3'
miRNA:   3'- -CgAgCGGGACG----UGAagCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 1504 0.72 0.234215
Target:  5'- cCUCGgCCggUGCGCcUC-ACGGCCGCCa -3'
miRNA:   3'- cGAGCgGG--ACGUGaAGcUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 41708 0.72 0.259315
Target:  5'- gGCUCGCUCa-CGCUUC-ACGGCCuCCa -3'
miRNA:   3'- -CGAGCGGGacGUGAAGcUGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 5644 0.71 0.265924
Target:  5'- cGCUCGCCCUGUgACUUgCG-CGagcGCCGCg -3'
miRNA:   3'- -CGAGCGGGACG-UGAA-GCuGC---CGGUGg -5'
11403 3' -58.1 NC_003085.1 + 21570 0.71 0.265924
Target:  5'- uGgaCGCCCUGCACcaggUGACGGgCAUg -3'
miRNA:   3'- -CgaGCGGGACGUGaa--GCUGCCgGUGg -5'
11403 3' -58.1 NC_003085.1 + 25277 0.7 0.339585
Target:  5'- gGCgCGCCCgucuaccuCACcgCGACGGCCgGCCa -3'
miRNA:   3'- -CGaGCGGGac------GUGaaGCUGCCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 40826 0.7 0.347715
Target:  5'- gGC-CGgCCUGUACc-UGACGGCgGCCg -3'
miRNA:   3'- -CGaGCgGGACGUGaaGCUGCCGgUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.