miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 14542 0.66 0.515964
Target:  5'- cGCgUGCgCCUGCAUccacUCGuaGGCCGCCa -3'
miRNA:   3'- -CGaGCG-GGACGUGa---AGCugCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 46692 0.66 0.515964
Target:  5'- cGC-CGCCgCUGCcuGCUUC--CGGCCAgCg -3'
miRNA:   3'- -CGaGCGG-GACG--UGAAGcuGCCGGUgG- -5'
11403 3' -58.1 NC_003085.1 + 31140 0.66 0.515964
Target:  5'- cGCgUUGCggCUGCcCUUCgGACGGCCAgCg -3'
miRNA:   3'- -CG-AGCGg-GACGuGAAG-CUGCCGGUgG- -5'
11403 3' -58.1 NC_003085.1 + 45878 0.66 0.515964
Target:  5'- aGUUCGCcgCCUcggcagcgaggcGCGCUUgCGccCGGCCGCCu -3'
miRNA:   3'- -CGAGCG--GGA------------CGUGAA-GCu-GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 17030 0.66 0.513899
Target:  5'- uGCUCGCguaugacgccaaccuCCggaGCUUCGAgggcgucgagaaguaCGGCCGCCc -3'
miRNA:   3'- -CGAGCG---------------GGacgUGAAGCU---------------GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 23334 0.67 0.505674
Target:  5'- cGCUCuggccgGCCaaGCGC--CGcCGGCCGCCg -3'
miRNA:   3'- -CGAG------CGGgaCGUGaaGCuGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 28042 0.67 0.505674
Target:  5'- aGgUCGUUCUGCGCggccUCGGacagcaGGCgGCCg -3'
miRNA:   3'- -CgAGCGGGACGUGa---AGCUg-----CCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 35389 0.67 0.505674
Target:  5'- gGCggaGUCCgagGCGCUcgcagauggccUCGACGGacaCGCCg -3'
miRNA:   3'- -CGag-CGGGa--CGUGA-----------AGCUGCCg--GUGG- -5'
11403 3' -58.1 NC_003085.1 + 46483 0.67 0.505674
Target:  5'- gGUUC-CCaCUGCGCgcUCGACGaaaCCACCg -3'
miRNA:   3'- -CGAGcGG-GACGUGa-AGCUGCc--GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40644 0.67 0.502604
Target:  5'- -gUCGCCCUGaCGCUggcugCGcCGcgcaaccucgcggaGCCGCCg -3'
miRNA:   3'- cgAGCGGGAC-GUGAa----GCuGC--------------CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 8179 0.67 0.502604
Target:  5'- uGCUUGCgCaGCGCUucggcgucucggugUCGACGGUCGaauCCa -3'
miRNA:   3'- -CGAGCGgGaCGUGA--------------AGCUGCCGGU---GG- -5'
11403 3' -58.1 NC_003085.1 + 37921 0.67 0.495473
Target:  5'- cGCagGCCCcgGCGC-UCGACGaacgcGCgGCCg -3'
miRNA:   3'- -CGagCGGGa-CGUGaAGCUGC-----CGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 25240 0.67 0.495473
Target:  5'- cGC-CGCCCuggUGCGCUccgCGGCGGgCGUCg -3'
miRNA:   3'- -CGaGCGGG---ACGUGAa--GCUGCCgGUGG- -5'
11403 3' -58.1 NC_003085.1 + 26737 0.67 0.495473
Target:  5'- ---aGCCgaGUGCUucUCGGCaGCCGCCg -3'
miRNA:   3'- cgagCGGgaCGUGA--AGCUGcCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 21901 0.67 0.485366
Target:  5'- --gUGCCCUGCcagAUggCGACGucaccGCCGCCg -3'
miRNA:   3'- cgaGCGGGACG---UGaaGCUGC-----CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 5832 0.67 0.485366
Target:  5'- gGCgucaGCCCUGCagguccgggACUggGACGG-CACCg -3'
miRNA:   3'- -CGag--CGGGACG---------UGAagCUGCCgGUGG- -5'
11403 3' -58.1 NC_003085.1 + 24343 0.67 0.482353
Target:  5'- cGCggCGCUCUacggcgacgggacgGC-CUUUGGCGGCCggGCCa -3'
miRNA:   3'- -CGa-GCGGGA--------------CGuGAAGCUGCCGG--UGG- -5'
11403 3' -58.1 NC_003085.1 + 30668 0.67 0.475358
Target:  5'- gGCagggCGCUCUGCGCcUCGcauUGGCUGCUg -3'
miRNA:   3'- -CGa---GCGGGACGUGaAGCu--GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 26930 0.67 0.473369
Target:  5'- cGUUgGCCUgcauguaccgcgGCGCUUCGuGCGGCUuCCg -3'
miRNA:   3'- -CGAgCGGGa-----------CGUGAAGC-UGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 33612 0.67 0.465455
Target:  5'- --aCGCCaacgGC-CUUCGAagucugGGCCACCa -3'
miRNA:   3'- cgaGCGGga--CGuGAAGCUg-----CCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.