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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11404 | 3' | -62.8 | NC_003085.1 | + | 12016 | 0.66 | 0.325554 |
Target: 5'- aUGCGGUGGCggGCGCGGgguugGCGcUCgcuaGCCGc -3' miRNA: 3'- -ACGCCGCCG--UGCGCC-----UGC-AGg---UGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 497 | 0.66 | 0.325554 |
Target: 5'- cGCGGagaugaaGGCGCGCGGGCcgg-ACCGg -3' miRNA: 3'- aCGCCg------CCGUGCGCCUGcaggUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 28066 | 0.66 | 0.325554 |
Target: 5'- aGCaGGCGGC-CGaUGGugaGUCCGCUGg -3' miRNA: 3'- aCG-CCGCCGuGC-GCCug-CAGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 22064 | 0.66 | 0.318026 |
Target: 5'- cGCGGgcagguaccaCGcGCGCGCGGugucGCGuUCCACCa- -3' miRNA: 3'- aCGCC----------GC-CGUGCGCC----UGC-AGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 33216 | 0.66 | 0.318026 |
Target: 5'- gGCGGCGGCGCaGCacgaGGAUGacgacgCCAgCCGc -3' miRNA: 3'- aCGCCGCCGUG-CG----CCUGCa-----GGU-GGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 566 | 0.66 | 0.310629 |
Target: 5'- gGCGGCgcGGCugGCGGGCcaaugCU-CCGUg -3' miRNA: 3'- aCGCCG--CCGugCGCCUGca---GGuGGCA- -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 43210 | 0.67 | 0.296231 |
Target: 5'- -aCGGCGGCGuCGUGuaGGCGUCgACCa- -3' miRNA: 3'- acGCCGCCGU-GCGC--CUGCAGgUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 24186 | 0.67 | 0.296231 |
Target: 5'- cGCGGUgagguagacgGGCGCGCcgacgacGACGcCCGCCGc -3' miRNA: 3'- aCGCCG----------CCGUGCGc------CUGCaGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 8670 | 0.67 | 0.296231 |
Target: 5'- cGUGGCcuugGGCGC-CGGGgugcCGUCCGCCa- -3' miRNA: 3'- aCGCCG----CCGUGcGCCU----GCAGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 8735 | 0.67 | 0.296231 |
Target: 5'- gUGCcucCGGCGCcgGCGaGAgGUCCACCGg -3' miRNA: 3'- -ACGcc-GCCGUG--CGC-CUgCAGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 25008 | 0.67 | 0.287154 |
Target: 5'- cUGCGaGCGccagaagggccacaGCGCGCGGuuGaugCCGCCGUa -3' miRNA: 3'- -ACGC-CGC--------------CGUGCGCCugCa--GGUGGCA- -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 18093 | 0.67 | 0.287154 |
Target: 5'- uUGCGGCcggGGUcgagcuucuugucgGCGCGGGCGggaCgGCCGg -3' miRNA: 3'- -ACGCCG---CCG--------------UGCGCCUGCa--GgUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 24457 | 0.67 | 0.282358 |
Target: 5'- aGCGGCGccuucuGCAcCGCGGACGUgU-CCGa -3' miRNA: 3'- aCGCCGC------CGU-GCGCCUGCAgGuGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 15361 | 0.67 | 0.269003 |
Target: 5'- aUGCGGUGGC-C-CuGACG-CCACCGa -3' miRNA: 3'- -ACGCCGCCGuGcGcCUGCaGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 27346 | 0.66 | 0.348925 |
Target: 5'- cUGCuGCGGCGC-CGGGC-UCUGCUGg -3' miRNA: 3'- -ACGcCGCCGUGcGCCUGcAGGUGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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