miRNA display CGI


Results 61 - 75 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 16041 0.66 0.341004
Target:  5'- uUGCGGgcgaGGUAUG-GGACGUgCGCCa- -3'
miRNA:   3'- -ACGCCg---CCGUGCgCCUGCAgGUGGca -5'
11404 3' -62.8 NC_003085.1 + 9850 0.66 0.33167
Target:  5'- cGCGGagaaagccauuGC-CGUGGACGUCCACgGa -3'
miRNA:   3'- aCGCCgc---------CGuGCGCCUGCAGGUGgCa -5'
11404 3' -62.8 NC_003085.1 + 40773 0.66 0.325554
Target:  5'- gUGUGGCugacGUugGCGGACGgcaCC-CCGg -3'
miRNA:   3'- -ACGCCGc---CGugCGCCUGCa--GGuGGCa -5'
11404 3' -62.8 NC_003085.1 + 28596 0.66 0.31728
Target:  5'- gGCGGUGGaCACGcCGGugGUguggcgcUCGCUGc -3'
miRNA:   3'- aCGCCGCC-GUGC-GCCugCA-------GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 40988 0.66 0.310629
Target:  5'- aGCGGCaagGGCugGCccagcGGCGUCgucauCGCCGUg -3'
miRNA:   3'- aCGCCG---CCGugCGc----CUGCAG-----GUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 40483 0.67 0.303365
Target:  5'- cUGUcGCuGCugGCGGGCGUCgucgaGCCGg -3'
miRNA:   3'- -ACGcCGcCGugCGCCUGCAGg----UGGCa -5'
11404 3' -62.8 NC_003085.1 + 48186 0.67 0.296231
Target:  5'- -uCGGCGcGCACGaGGugGcCCACCu- -3'
miRNA:   3'- acGCCGC-CGUGCgCCugCaGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 11780 0.67 0.295525
Target:  5'- gGCGGCGcCGCGCuccGGGCGUgucggcugccccaUCGCCGg -3'
miRNA:   3'- aCGCCGCcGUGCG---CCUGCA-------------GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 19193 0.67 0.282358
Target:  5'- gGCaGGUGGCACGagcaGGACuucaccUUCACCGUc -3'
miRNA:   3'- aCG-CCGCCGUGCg---CCUGc-----AGGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 37992 0.67 0.275616
Target:  5'- cUGCGGCGGUG-GUgGGACGcUCaCACCGc -3'
miRNA:   3'- -ACGCCGCCGUgCG-CCUGC-AG-GUGGCa -5'
11404 3' -62.8 NC_003085.1 + 28518 0.67 0.26252
Target:  5'- gGCGGUGGaCGCGUcaGGGCGaaUCCGCgGc -3'
miRNA:   3'- aCGCCGCC-GUGCG--CCUGC--AGGUGgCa -5'
11404 3' -62.8 NC_003085.1 + 793 0.67 0.26252
Target:  5'- cUGUGGCcccaGGcCACgGUGGACGUCCGCg-- -3'
miRNA:   3'- -ACGCCG----CC-GUG-CGCCUGCAGGUGgca -5'
11404 3' -62.8 NC_003085.1 + 13569 0.67 0.26252
Target:  5'- aGCaaGGC-GCGCGUGGACGUgggCACCGg -3'
miRNA:   3'- aCG--CCGcCGUGCGCCUGCAg--GUGGCa -5'
11404 3' -62.8 NC_003085.1 + 28238 0.68 0.256164
Target:  5'- gGUGGCGGCA-GCgguacuugGGACGgcUCCACCu- -3'
miRNA:   3'- aCGCCGCCGUgCG--------CCUGC--AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 13911 0.72 0.11797
Target:  5'- gUGCGGCGuGCGCGCguuucGGACGgggcgCgCGCCGa -3'
miRNA:   3'- -ACGCCGC-CGUGCG-----CCUGCa----G-GUGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.