miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 288 0.72 0.121175
Target:  5'- aGCGGCGGCAgGacCGGGCGgCCuCCGa -3'
miRNA:   3'- aCGCCGCCGUgC--GCCUGCaGGuGGCa -5'
11404 3' -62.8 NC_003085.1 + 497 0.66 0.325554
Target:  5'- cGCGGagaugaaGGCGCGCGGGCcgg-ACCGg -3'
miRNA:   3'- aCGCCg------CCGUGCGCCUGcaggUGGCa -5'
11404 3' -62.8 NC_003085.1 + 566 0.66 0.310629
Target:  5'- gGCGGCgcGGCugGCGGGCcaaugCU-CCGUg -3'
miRNA:   3'- aCGCCG--CCGugCGCCUGca---GGuGGCA- -5'
11404 3' -62.8 NC_003085.1 + 793 0.67 0.26252
Target:  5'- cUGUGGCcccaGGcCACgGUGGACGUCCGCg-- -3'
miRNA:   3'- -ACGCCG----CC-GUG-CGCCUGCAGGUGgca -5'
11404 3' -62.8 NC_003085.1 + 1587 0.66 0.333213
Target:  5'- aGCaGGCcGCACGCGcuGACGUCuCGCuCGa -3'
miRNA:   3'- aCG-CCGcCGUGCGC--CUGCAG-GUG-GCa -5'
11404 3' -62.8 NC_003085.1 + 2644 0.68 0.256164
Target:  5'- -uCGGCGGCGaggugaugcCGCccaaGGACGUggCCACCGUc -3'
miRNA:   3'- acGCCGCCGU---------GCG----CCUGCA--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 4219 0.68 0.237851
Target:  5'- cGCGGCGGguUACGCuGAgCGUCaGCCGg -3'
miRNA:   3'- aCGCCGCC--GUGCGcCU-GCAGgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 5189 0.68 0.237851
Target:  5'- gGCagGGCGGCGcCGUGGguaACGUCUAUCGc -3'
miRNA:   3'- aCG--CCGCCGU-GCGCC---UGCAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 7923 0.77 0.053317
Target:  5'- cGCGGCGGCA-GCaGACGucacUCCACCGg -3'
miRNA:   3'- aCGCCGCCGUgCGcCUGC----AGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 8670 0.67 0.296231
Target:  5'- cGUGGCcuugGGCGC-CGGGgugcCGUCCGCCa- -3'
miRNA:   3'- aCGCCG----CCGUGcGCCU----GCAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 8735 0.67 0.296231
Target:  5'- gUGCcucCGGCGCcgGCGaGAgGUCCACCGg -3'
miRNA:   3'- -ACGcc-GCCGUG--CGC-CUgCAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 8973 0.72 0.121175
Target:  5'- gGCcGCGGCcCGCGGAC-UUCACCGg -3'
miRNA:   3'- aCGcCGCCGuGCGCCUGcAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 9139 0.66 0.348925
Target:  5'- cUGgGaGCGGCACcugGCGGAgcuCG-CCGCCGc -3'
miRNA:   3'- -ACgC-CGCCGUG---CGCCU---GCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 9509 0.71 0.149865
Target:  5'- -aUGGCGGCGCGCGG-CGggUCAUCGg -3'
miRNA:   3'- acGCCGCCGUGCGCCuGCa-GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 9850 0.66 0.33167
Target:  5'- cGCGGagaaagccauuGC-CGUGGACGUCCACgGa -3'
miRNA:   3'- aCGCCgc---------CGuGCGCCUGCAGGUGgCa -5'
11404 3' -62.8 NC_003085.1 + 11198 0.68 0.24383
Target:  5'- cUGCGGaaggaaGGCACGCcauGACGUgCaACCGUc -3'
miRNA:   3'- -ACGCCg-----CCGUGCGc--CUGCAgG-UGGCA- -5'
11404 3' -62.8 NC_003085.1 + 11373 0.71 0.162136
Target:  5'- gGUGGCGGCGC-CGGACaccugcgCUGCCGUc -3'
miRNA:   3'- aCGCCGCCGUGcGCCUGca-----GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 11780 0.67 0.295525
Target:  5'- gGCGGCGcCGCGCuccGGGCGUgucggcugccccaUCGCCGg -3'
miRNA:   3'- aCGCCGCcGUGCG---CCUGCA-------------GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 12016 0.66 0.325554
Target:  5'- aUGCGGUGGCggGCGCGGgguugGCGcUCgcuaGCCGc -3'
miRNA:   3'- -ACGCCGCCG--UGCGCC-----UGC-AGg---UGGCa -5'
11404 3' -62.8 NC_003085.1 + 12292 0.71 0.149865
Target:  5'- cGCGaCGGC--GCGGugGUCCGCUGg -3'
miRNA:   3'- aCGCcGCCGugCGCCugCAGGUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.