miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 28238 0.68 0.256164
Target:  5'- gGUGGCGGCA-GCgguacuugGGACGgcUCCACCu- -3'
miRNA:   3'- aCGCCGCCGUgCG--------CCUGC--AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 29788 0.68 0.22626
Target:  5'- -cUGGCGGCAUGCuucuCGUCCACCc- -3'
miRNA:   3'- acGCCGCCGUGCGccu-GCAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 5189 0.68 0.237851
Target:  5'- gGCagGGCGGCGcCGUGGguaACGUCUAUCGc -3'
miRNA:   3'- aCG--CCGCCGU-GCGCC---UGCAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 4219 0.68 0.237851
Target:  5'- cGCGGCGGguUACGCuGAgCGUCaGCCGg -3'
miRNA:   3'- aCGCCGCC--GUGCGcCU-GCAGgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 11198 0.68 0.24383
Target:  5'- cUGCGGaaggaaGGCACGCcauGACGUgCaACCGUc -3'
miRNA:   3'- -ACGCCg-----CCGUGCGc--CUGCAgG-UGGCA- -5'
11404 3' -62.8 NC_003085.1 + 48527 0.68 0.24383
Target:  5'- gGCGGCGaGgGCGCGGGCcuuccaGUCCuCCu- -3'
miRNA:   3'- aCGCCGC-CgUGCGCCUG------CAGGuGGca -5'
11404 3' -62.8 NC_003085.1 + 18107 0.68 0.249934
Target:  5'- aGCGGCuGCGCaugGCGGccuaccgguACGUCCGCgCGg -3'
miRNA:   3'- aCGCCGcCGUG---CGCC---------UGCAGGUG-GCa -5'
11404 3' -62.8 NC_003085.1 + 29545 0.68 0.254282
Target:  5'- aGUGGCaGGCcagcaaccaggccaACGCGGACGUCUucggcgGCCu- -3'
miRNA:   3'- aCGCCG-CCG--------------UGCGCCUGCAGG------UGGca -5'
11404 3' -62.8 NC_003085.1 + 32188 0.68 0.255535
Target:  5'- aGUGGUGGCGCGCGuGcuucaacGCGcCCugCGc -3'
miRNA:   3'- aCGCCGCCGUGCGC-C-------UGCaGGugGCa -5'
11404 3' -62.8 NC_003085.1 + 42835 0.69 0.220646
Target:  5'- cGCuGGCGGCGCGCGucuuCGUcuccCCACCu- -3'
miRNA:   3'- aCG-CCGCCGUGCGCcu--GCA----GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 41561 0.69 0.209775
Target:  5'- cGCGGCGGCAguCGCGGGag-CCAgaGUc -3'
miRNA:   3'- aCGCCGCCGU--GCGCCUgcaGGUggCA- -5'
11404 3' -62.8 NC_003085.1 + 29115 0.69 0.207657
Target:  5'- aGCGGCGacGCgGCGCGGAaccaggcgauugaGUCCGCCu- -3'
miRNA:   3'- aCGCCGC--CG-UGCGCCUg------------CAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 8973 0.72 0.121175
Target:  5'- gGCcGCGGCcCGCGGAC-UUCACCGg -3'
miRNA:   3'- aCGcCGCCGuGCGCCUGcAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 42714 0.72 0.134105
Target:  5'- aGCGGCGGCaccucagGCGUGGGCGUCggggcgaugcgggCGCgGUg -3'
miRNA:   3'- aCGCCGCCG-------UGCGCCUGCAG-------------GUGgCA- -5'
11404 3' -62.8 NC_003085.1 + 12292 0.71 0.149865
Target:  5'- cGCGaCGGC--GCGGugGUCCGCUGg -3'
miRNA:   3'- aCGCcGCCGugCGCCugCAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 48565 0.71 0.162136
Target:  5'- aGCGGguUGGCACGggaugccccuCGGACG-CCACCGc -3'
miRNA:   3'- aCGCC--GCCGUGC----------GCCUGCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 32140 0.7 0.17851
Target:  5'- gGgGGCGGCugGUGGcgcgguggguuacgGCGUCgGCCa- -3'
miRNA:   3'- aCgCCGCCGugCGCC--------------UGCAGgUGGca -5'
11404 3' -62.8 NC_003085.1 + 25448 0.7 0.1799
Target:  5'- aGCGGCGGC-CGguuucugGGugGUCgGCCGc -3'
miRNA:   3'- aCGCCGCCGuGCg------CCugCAGgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 27678 0.7 0.184603
Target:  5'- gGCGGCGacguGCugGUgcugucgcgucuGGGCGUCCGCCc- -3'
miRNA:   3'- aCGCCGC----CGugCG------------CCUGCAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 39665 0.69 0.206605
Target:  5'- aGCGGCGcGCGCGUGagcagcagcaGGCGcuggaggcucgucucUCCGCCGUu -3'
miRNA:   3'- aCGCCGC-CGUGCGC----------CUGC---------------AGGUGGCA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.