Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11404 | 3' | -62.8 | NC_003085.1 | + | 28238 | 0.68 | 0.256164 |
Target: 5'- gGUGGCGGCA-GCgguacuugGGACGgcUCCACCu- -3' miRNA: 3'- aCGCCGCCGUgCG--------CCUGC--AGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 29788 | 0.68 | 0.22626 |
Target: 5'- -cUGGCGGCAUGCuucuCGUCCACCc- -3' miRNA: 3'- acGCCGCCGUGCGccu-GCAGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 5189 | 0.68 | 0.237851 |
Target: 5'- gGCagGGCGGCGcCGUGGguaACGUCUAUCGc -3' miRNA: 3'- aCG--CCGCCGU-GCGCC---UGCAGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 4219 | 0.68 | 0.237851 |
Target: 5'- cGCGGCGGguUACGCuGAgCGUCaGCCGg -3' miRNA: 3'- aCGCCGCC--GUGCGcCU-GCAGgUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 11198 | 0.68 | 0.24383 |
Target: 5'- cUGCGGaaggaaGGCACGCcauGACGUgCaACCGUc -3' miRNA: 3'- -ACGCCg-----CCGUGCGc--CUGCAgG-UGGCA- -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 48527 | 0.68 | 0.24383 |
Target: 5'- gGCGGCGaGgGCGCGGGCcuuccaGUCCuCCu- -3' miRNA: 3'- aCGCCGC-CgUGCGCCUG------CAGGuGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 18107 | 0.68 | 0.249934 |
Target: 5'- aGCGGCuGCGCaugGCGGccuaccgguACGUCCGCgCGg -3' miRNA: 3'- aCGCCGcCGUG---CGCC---------UGCAGGUG-GCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 29545 | 0.68 | 0.254282 |
Target: 5'- aGUGGCaGGCcagcaaccaggccaACGCGGACGUCUucggcgGCCu- -3' miRNA: 3'- aCGCCG-CCG--------------UGCGCCUGCAGG------UGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 32188 | 0.68 | 0.255535 |
Target: 5'- aGUGGUGGCGCGCGuGcuucaacGCGcCCugCGc -3' miRNA: 3'- aCGCCGCCGUGCGC-C-------UGCaGGugGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 42835 | 0.69 | 0.220646 |
Target: 5'- cGCuGGCGGCGCGCGucuuCGUcuccCCACCu- -3' miRNA: 3'- aCG-CCGCCGUGCGCcu--GCA----GGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 41561 | 0.69 | 0.209775 |
Target: 5'- cGCGGCGGCAguCGCGGGag-CCAgaGUc -3' miRNA: 3'- aCGCCGCCGU--GCGCCUgcaGGUggCA- -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 29115 | 0.69 | 0.207657 |
Target: 5'- aGCGGCGacGCgGCGCGGAaccaggcgauugaGUCCGCCu- -3' miRNA: 3'- aCGCCGC--CG-UGCGCCUg------------CAGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 8973 | 0.72 | 0.121175 |
Target: 5'- gGCcGCGGCcCGCGGAC-UUCACCGg -3' miRNA: 3'- aCGcCGCCGuGCGCCUGcAGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 42714 | 0.72 | 0.134105 |
Target: 5'- aGCGGCGGCaccucagGCGUGGGCGUCggggcgaugcgggCGCgGUg -3' miRNA: 3'- aCGCCGCCG-------UGCGCCUGCAG-------------GUGgCA- -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 12292 | 0.71 | 0.149865 |
Target: 5'- cGCGaCGGC--GCGGugGUCCGCUGg -3' miRNA: 3'- aCGCcGCCGugCGCCugCAGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 48565 | 0.71 | 0.162136 |
Target: 5'- aGCGGguUGGCACGggaugccccuCGGACG-CCACCGc -3' miRNA: 3'- aCGCC--GCCGUGC----------GCCUGCaGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 32140 | 0.7 | 0.17851 |
Target: 5'- gGgGGCGGCugGUGGcgcgguggguuacgGCGUCgGCCa- -3' miRNA: 3'- aCgCCGCCGugCGCC--------------UGCAGgUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 25448 | 0.7 | 0.1799 |
Target: 5'- aGCGGCGGC-CGguuucugGGugGUCgGCCGc -3' miRNA: 3'- aCGCCGCCGuGCg------CCugCAGgUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 27678 | 0.7 | 0.184603 |
Target: 5'- gGCGGCGacguGCugGUgcugucgcgucuGGGCGUCCGCCc- -3' miRNA: 3'- aCGCCGC----CGugCG------------CCUGCAGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 39665 | 0.69 | 0.206605 |
Target: 5'- aGCGGCGcGCGCGUGagcagcagcaGGCGcuggaggcucgucucUCCGCCGUu -3' miRNA: 3'- aCGCCGC-CGUGCGC----------CUGC---------------AGGUGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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