miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 8735 0.67 0.296231
Target:  5'- gUGCcucCGGCGCcgGCGaGAgGUCCACCGg -3'
miRNA:   3'- -ACGcc-GCCGUG--CGC-CUgCAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 43210 0.67 0.296231
Target:  5'- -aCGGCGGCGuCGUGuaGGCGUCgACCa- -3'
miRNA:   3'- acGCCGCCGU-GCGC--CUGCAGgUGGca -5'
11404 3' -62.8 NC_003085.1 + 42381 0.67 0.296231
Target:  5'- -uCGGCGGCaugaGCGCGGGCcuuGUCCuCCu- -3'
miRNA:   3'- acGCCGCCG----UGCGCCUG---CAGGuGGca -5'
11404 3' -62.8 NC_003085.1 + 48186 0.67 0.296231
Target:  5'- -uCGGCGcGCACGaGGugGcCCACCu- -3'
miRNA:   3'- acGCCGC-CGUGCgCCugCaGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 11780 0.67 0.295525
Target:  5'- gGCGGCGcCGCGCuccGGGCGUgucggcugccccaUCGCCGg -3'
miRNA:   3'- aCGCCGCcGUGCG---CCUGCA-------------GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 25008 0.67 0.287154
Target:  5'- cUGCGaGCGccagaagggccacaGCGCGCGGuuGaugCCGCCGUa -3'
miRNA:   3'- -ACGC-CGC--------------CGUGCGCCugCa--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 18093 0.67 0.287154
Target:  5'- uUGCGGCcggGGUcgagcuucuugucgGCGCGGGCGggaCgGCCGg -3'
miRNA:   3'- -ACGCCG---CCG--------------UGCGCCUGCa--GgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 24457 0.67 0.282358
Target:  5'- aGCGGCGccuucuGCAcCGCGGACGUgU-CCGa -3'
miRNA:   3'- aCGCCGC------CGU-GCGCCUGCAgGuGGCa -5'
11404 3' -62.8 NC_003085.1 + 19193 0.67 0.282358
Target:  5'- gGCaGGUGGCACGagcaGGACuucaccUUCACCGUc -3'
miRNA:   3'- aCG-CCGCCGUGCg---CCUGc-----AGGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 37992 0.67 0.275616
Target:  5'- cUGCGGCGGUG-GUgGGACGcUCaCACCGc -3'
miRNA:   3'- -ACGCCGCCGUgCG-CCUGC-AG-GUGGCa -5'
11404 3' -62.8 NC_003085.1 + 15361 0.67 0.269003
Target:  5'- aUGCGGUGGC-C-CuGACG-CCACCGa -3'
miRNA:   3'- -ACGCCGCCGuGcGcCUGCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 40787 0.67 0.26252
Target:  5'- cGCGcacGCGucGCGCGCGGACGggCUgaaACCGUg -3'
miRNA:   3'- aCGC---CGC--CGUGCGCCUGCa-GG---UGGCA- -5'
11404 3' -62.8 NC_003085.1 + 13569 0.67 0.26252
Target:  5'- aGCaaGGC-GCGCGUGGACGUgggCACCGg -3'
miRNA:   3'- aCG--CCGcCGUGCGCCUGCAg--GUGGCa -5'
11404 3' -62.8 NC_003085.1 + 793 0.67 0.26252
Target:  5'- cUGUGGCcccaGGcCACgGUGGACGUCCGCg-- -3'
miRNA:   3'- -ACGCCG----CC-GUG-CGCCUGCAGGUGgca -5'
11404 3' -62.8 NC_003085.1 + 28518 0.67 0.26252
Target:  5'- gGCGGUGGaCGCGUcaGGGCGaaUCCGCgGc -3'
miRNA:   3'- aCGCCGCC-GUGCG--CCUGC--AGGUGgCa -5'
11404 3' -62.8 NC_003085.1 + 32994 0.67 0.26252
Target:  5'- --aGGCGGCGCGCaGGuCGgacaCUGCCGUc -3'
miRNA:   3'- acgCCGCCGUGCG-CCuGCa---GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 49158 0.67 0.261238
Target:  5'- cGCGGgGGCA-GCGGACGgggacucggcggUCACCu- -3'
miRNA:   3'- aCGCCgCCGUgCGCCUGCa-----------GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 28238 0.68 0.256164
Target:  5'- gGUGGCGGCA-GCgguacuugGGACGgcUCCACCu- -3'
miRNA:   3'- aCGCCGCCGUgCG--------CCUGC--AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 2644 0.68 0.256164
Target:  5'- -uCGGCGGCGaggugaugcCGCccaaGGACGUggCCACCGUc -3'
miRNA:   3'- acGCCGCCGU---------GCG----CCUGCA--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 32188 0.68 0.255535
Target:  5'- aGUGGUGGCGCGCGuGcuucaacGCGcCCugCGc -3'
miRNA:   3'- aCGCCGCCGUGCGC-C-------UGCaGGugGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.