miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 48688 1.09 0.000603
Target:  5'- gCCACAGCAGCAGGCCGCAAGCAACUGc -3'
miRNA:   3'- -GGUGUCGUCGUCCGGCGUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 12238 0.76 0.15096
Target:  5'- gCGCGGCGGCuGGGCCGCcagaauugaAGGCcGCUGg -3'
miRNA:   3'- gGUGUCGUCG-UCCGGCG---------UUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 37054 0.69 0.415357
Target:  5'- gCGCAGCGGCcccGCCGgguCGAGCAGCa- -3'
miRNA:   3'- gGUGUCGUCGuc-CGGC---GUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 39897 0.67 0.568236
Target:  5'- uCgGCGGCGGCAGGCCaaacGCcgcucuuugggaugGGGUcGCUGg -3'
miRNA:   3'- -GgUGUCGUCGUCCGG----CG--------------UUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 29112 0.66 0.638513
Target:  5'- -aGCAGCGGCGacgcGGCgCGgaacCAGGCGAUUGa -3'
miRNA:   3'- ggUGUCGUCGU----CCG-GC----GUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 48844 0.67 0.527807
Target:  5'- gCGCAGCAcaacccgccGUAGGCCGCGAcgGGCUu -3'
miRNA:   3'- gGUGUCGU---------CGUCCGGCGUUcgUUGAc -5'
11404 5' -55.9 NC_003085.1 + 39617 0.74 0.203941
Target:  5'- gCACcgAGCAGguGGCCGCAGgaguggcGCAACUu -3'
miRNA:   3'- gGUG--UCGUCguCCGGCGUU-------CGUUGAc -5'
11404 5' -55.9 NC_003085.1 + 18762 0.66 0.638513
Target:  5'- gCCGCuGgAGCGGGCgauggacaaaGCGaaGGCGGCUGu -3'
miRNA:   3'- -GGUGuCgUCGUCCGg---------CGU--UCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 22175 0.66 0.631791
Target:  5'- -gACAGCAggaaauggcgaagguGCAGGCCGaggugcaGGGCGACc- -3'
miRNA:   3'- ggUGUCGU---------------CGUCCGGCg------UUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 35097 0.66 0.627309
Target:  5'- uCCGC-GCAGCcaGCCGCuGGCuuCUGu -3'
miRNA:   3'- -GGUGuCGUCGucCGGCGuUCGuuGAC- -5'
11404 5' -55.9 NC_003085.1 + 30660 0.68 0.507459
Target:  5'- gUCGCuGCGGCAGGgCGCucugcgccucgcauuGGCuGCUGa -3'
miRNA:   3'- -GGUGuCGUCGUCCgGCGu--------------UCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 18083 0.67 0.517058
Target:  5'- -aGCGGCAGUgggaguuGGCCuGgAAGCGGCUGc -3'
miRNA:   3'- ggUGUCGUCGu------CCGG-CgUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 30809 0.67 0.517058
Target:  5'- gCGCcGCAGCAaucaCCGCGGGCGACa- -3'
miRNA:   3'- gGUGuCGUCGUcc--GGCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 41002 0.67 0.527807
Target:  5'- gCC-CAGCGGCGucgucaucGCCGUggGCGucGCUGg -3'
miRNA:   3'- -GGuGUCGUCGUc-------CGGCGuuCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 41559 0.68 0.506398
Target:  5'- gCCGCGGCGGCA-GUCGCGGG-AGCc- -3'
miRNA:   3'- -GGUGUCGUCGUcCGGCGUUCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 26269 0.68 0.506398
Target:  5'- cCUGCAGCAGCAauGGacguuugccaCGCAGGUcgGGCUGg -3'
miRNA:   3'- -GGUGUCGUCGU--CCg---------GCGUUCG--UUGAC- -5'
11404 5' -55.9 NC_003085.1 + 22262 0.72 0.295611
Target:  5'- -aGCGGCAGCAGGCCGaguGgAACg- -3'
miRNA:   3'- ggUGUCGUCGUCCGGCguuCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 48438 0.72 0.280872
Target:  5'- gCAUGGaCGGCgAGGCCGCGAGCAu--- -3'
miRNA:   3'- gGUGUC-GUCG-UCCGGCGUUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 43358 0.72 0.273724
Target:  5'- uUCGCGGCGucGUAGGCgGCAAGCAGg-- -3'
miRNA:   3'- -GGUGUCGU--CGUCCGgCGUUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 26364 0.73 0.244644
Target:  5'- aCCGCAcGCAGCggaugccguugcucGGGCCGCuGAGCGcccaggGCUGg -3'
miRNA:   3'- -GGUGU-CGUCG--------------UCCGGCG-UUCGU------UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.