miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 666 0.71 0.169829
Target:  5'- cCGCCCGGACGUcGCCGGCcaccugucccGCgUCCGGc -3'
miRNA:   3'- -GUGGGCCUGCGcCGGCUG----------CG-AGGUCc -5'
11405 3' -62.7 NC_003085.1 + 701 0.67 0.300339
Target:  5'- nGCCuCGGGCGCGGCCuGAgcaGgUCCAc- -3'
miRNA:   3'- gUGG-GCCUGCGCCGG-CUg--CgAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 931 0.66 0.337362
Target:  5'- -uCCUGGAgCGuCGGCCG-CG-UCCGGGu -3'
miRNA:   3'- guGGGCCU-GC-GCCGGCuGCgAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 1494 0.67 0.293322
Target:  5'- uGCUC-GACGCGGCCcguccGGCGCUCgGGc -3'
miRNA:   3'- gUGGGcCUGCGCCGG-----CUGCGAGgUCc -5'
11405 3' -62.7 NC_003085.1 + 2766 0.68 0.250207
Target:  5'- uCACCCGGGCGCGauguaauuuccucucGCCuGACGUcuucUCUAGcGg -3'
miRNA:   3'- -GUGGGCCUGCGC---------------CGG-CUGCG----AGGUC-C- -5'
11405 3' -62.7 NC_003085.1 + 2771 0.74 0.094964
Target:  5'- uGgCCGGAagcaggcaGCGG-CGGCGCUCCAGGc -3'
miRNA:   3'- gUgGGCCUg-------CGCCgGCUGCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 3210 0.69 0.224464
Target:  5'- gGCCCGaugccgcaaGGCGauGCCGGCGCUaCCuGGg -3'
miRNA:   3'- gUGGGC---------CUGCgcCGGCUGCGA-GGuCC- -5'
11405 3' -62.7 NC_003085.1 + 5139 0.66 0.361122
Target:  5'- aCGCCCGaaGAgGaGGCCGACGCga-AGGc -3'
miRNA:   3'- -GUGGGC--CUgCgCCGGCUGCGaggUCC- -5'
11405 3' -62.7 NC_003085.1 + 5235 0.66 0.353074
Target:  5'- cUACUugUGGAUGUGGUgguuCGACGCUgCGGGc -3'
miRNA:   3'- -GUGG--GCCUGCGCCG----GCUGCGAgGUCC- -5'
11405 3' -62.7 NC_003085.1 + 5859 0.66 0.369297
Target:  5'- gCACUCGGGauggcaGCGccugcgaccucuGCCGugGCgCCGGGu -3'
miRNA:   3'- -GUGGGCCUg-----CGC------------CGGCugCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 6010 0.68 0.2539
Target:  5'- aCGgCUGGGCGCGGauguacgcCCgGACGCcgcgCCAGGa -3'
miRNA:   3'- -GUgGGCCUGCGCC--------GG-CUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 6917 0.7 0.183427
Target:  5'- uCGCCCGcGCGCuGGCCGAgGCgaagCGGGa -3'
miRNA:   3'- -GUGGGCcUGCG-CCGGCUgCGag--GUCC- -5'
11405 3' -62.7 NC_003085.1 + 7428 0.7 0.203048
Target:  5'- cUACCCGGcuggagagaagGCGCccucguccGuGCCGACGCcgCCGGGg -3'
miRNA:   3'- -GUGGGCC-----------UGCG--------C-CGGCUGCGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 8658 0.66 0.345154
Target:  5'- gGCCgGGACGCgcguGGCCuugGGCGC-CgGGGu -3'
miRNA:   3'- gUGGgCCUGCG----CCGG---CUGCGaGgUCC- -5'
11405 3' -62.7 NC_003085.1 + 8774 0.74 0.100215
Target:  5'- gCACCCGGACGUcgucccccuGcGCCGGCGgCUCCgcgAGGu -3'
miRNA:   3'- -GUGGGCCUGCG---------C-CGGCUGC-GAGG---UCC- -5'
11405 3' -62.7 NC_003085.1 + 9437 0.69 0.241762
Target:  5'- gACgCGGACGU-GCCGGCGCUCauGGa -3'
miRNA:   3'- gUGgGCCUGCGcCGGCUGCGAGguCC- -5'
11405 3' -62.7 NC_003085.1 + 9536 0.7 0.17879
Target:  5'- -cCCUGGuagugcacgACGCGGCCGACGCU--GGGc -3'
miRNA:   3'- guGGGCC---------UGCGCCGGCUGCGAggUCC- -5'
11405 3' -62.7 NC_003085.1 + 11289 0.76 0.068554
Target:  5'- gGCCCGGcuucggaaGCGCGcGCUGGCGCUUguGGa -3'
miRNA:   3'- gUGGGCC--------UGCGC-CGGCUGCGAGguCC- -5'
11405 3' -62.7 NC_003085.1 + 11596 0.66 0.344369
Target:  5'- gCACCuCcGACGUcuGGCCGgccagcgcaggcaGCGCUaCCAGGg -3'
miRNA:   3'- -GUGG-GcCUGCG--CCGGC-------------UGCGA-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 11768 0.66 0.345154
Target:  5'- cUACgaCGGuACgGCGGCgCcGCGCUCCGGGc -3'
miRNA:   3'- -GUGg-GCC-UG-CGCCG-GcUGCGAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.