miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11405 3' -62.7 NC_003085.1 + 42539 0.66 0.345154
Target:  5'- cCGCCCGGgAUGCGGUgGACcaugagcgggaaGCggUCGGGg -3'
miRNA:   3'- -GUGGGCC-UGCGCCGgCUG------------CGa-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 11596 0.66 0.344369
Target:  5'- gCACCuCcGACGUcuGGCCGgccagcgcaggcaGCGCUaCCAGGg -3'
miRNA:   3'- -GUGG-GcCUGCG--CCGGC-------------UGCGA-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 11883 0.66 0.337362
Target:  5'- uCGCCUGaGCGCgccgaguucauGGCCaGGCGCUCCAc- -3'
miRNA:   3'- -GUGGGCcUGCG-----------CCGG-CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 24392 0.66 0.337362
Target:  5'- gGCCUGGACGgGGCCG-UGC-CgGuGGa -3'
miRNA:   3'- gUGGGCCUGCgCCGGCuGCGaGgU-CC- -5'
11405 3' -62.7 NC_003085.1 + 931 0.66 0.337362
Target:  5'- -uCCUGGAgCGuCGGCCG-CG-UCCGGGu -3'
miRNA:   3'- guGGGCCU-GC-GCCGGCuGCgAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 45487 0.66 0.337362
Target:  5'- gCGCUCGacaaGCGCGGCCGucugGCUCCAu- -3'
miRNA:   3'- -GUGGGCc---UGCGCCGGCug--CGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 32494 0.67 0.307485
Target:  5'- gGCCCGGAgcgucaucuCGUGGaaGAUGCcuucCCAGGu -3'
miRNA:   3'- gUGGGCCU---------GCGCCggCUGCGa---GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 42763 0.67 0.307485
Target:  5'- -gUgCGGugcaGgGCGGCCGcaagcCGCUCCAGGg -3'
miRNA:   3'- guGgGCC----UgCGCCGGCu----GCGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 22893 0.67 0.307485
Target:  5'- aGCCUGGuGCGacucCGGCgGAgGCUgCCGGGg -3'
miRNA:   3'- gUGGGCC-UGC----GCCGgCUgCGA-GGUCC- -5'
11405 3' -62.7 NC_003085.1 + 31341 0.67 0.306046
Target:  5'- cCGCgCGGACGUaccgguaGGCCGccauGCGCagccgcuUCCAGGc -3'
miRNA:   3'- -GUGgGCCUGCG-------CCGGC----UGCG-------AGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 701 0.67 0.300339
Target:  5'- nGCCuCGGGCGCGGCCuGAgcaGgUCCAc- -3'
miRNA:   3'- gUGG-GCCUGCGCCGG-CUg--CgAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 33039 0.67 0.300339
Target:  5'- gCGCCUGGAuaUGgGGCCagaGACGCUUCAa- -3'
miRNA:   3'- -GUGGGCCU--GCgCCGG---CUGCGAGGUcc -5'
11405 3' -62.7 NC_003085.1 + 39743 0.67 0.300339
Target:  5'- aCGCCgaGGACacacagGCGuuCCGGCGCUCCAGu -3'
miRNA:   3'- -GUGGg-CCUG------CGCc-GGCUGCGAGGUCc -5'
11405 3' -62.7 NC_003085.1 + 23197 0.67 0.293322
Target:  5'- gGCCaGGACccugugaaggcaGUGGCCGGgcUGCUCCAGa -3'
miRNA:   3'- gUGGgCCUG------------CGCCGGCU--GCGAGGUCc -5'
11405 3' -62.7 NC_003085.1 + 1494 0.67 0.293322
Target:  5'- uGCUC-GACGCGGCCcguccGGCGCUCgGGc -3'
miRNA:   3'- gUGGGcCUGCGCCGG-----CUGCGAGgUCc -5'
11405 3' -62.7 NC_003085.1 + 22773 0.67 0.289174
Target:  5'- cCGCCgCGGugGCgacggcagcggcaacGGCCGcuccCGC-CCAGGa -3'
miRNA:   3'- -GUGG-GCCugCG---------------CCGGCu---GCGaGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 33341 0.68 0.279674
Target:  5'- uCAUCCGGGCGU---CGAC-CUCCAGGa -3'
miRNA:   3'- -GUGGGCCUGCGccgGCUGcGAGGUCC- -5'
11405 3' -62.7 NC_003085.1 + 34344 0.68 0.279674
Target:  5'- gCACCCGccguuGAUGCGGaCCuccgGAgGCUCaCAGGg -3'
miRNA:   3'- -GUGGGC-----CUGCGCC-GG----CUgCGAG-GUCC- -5'
11405 3' -62.7 NC_003085.1 + 34981 0.68 0.273041
Target:  5'- -uUgCGGAUGCGGUCGACGU--CGGGa -3'
miRNA:   3'- guGgGCCUGCGCCGGCUGCGagGUCC- -5'
11405 3' -62.7 NC_003085.1 + 25390 0.68 0.273041
Target:  5'- cCACCCGaGAcgagcCGCGGCUucccGCGCUucgCCAGGc -3'
miRNA:   3'- -GUGGGC-CU-----GCGCCGGc---UGCGA---GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.