miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11406 3' -59.6 NC_003085.1 + 12415 0.66 0.435848
Target:  5'- -cCGGCGGGGCCGCuGCGcuccgaggaGGCuGUgUCGu -3'
miRNA:   3'- aaGUCGCCUCGGUG-CGC---------CCGuCA-AGC- -5'
11406 3' -59.6 NC_003085.1 + 20600 0.66 0.435848
Target:  5'- cUCGGCaGcGCCGCGgaaguCGGGCGGcgCGg -3'
miRNA:   3'- aAGUCGcCuCGGUGC-----GCCCGUCaaGC- -5'
11406 3' -59.6 NC_003085.1 + 48734 0.66 0.434892
Target:  5'- -cCAGCGGAGgCgacugagGCGCGGGUGGa--- -3'
miRNA:   3'- aaGUCGCCUCgG-------UGCGCCCGUCaagc -5'
11406 3' -59.6 NC_003085.1 + 46714 0.66 0.398554
Target:  5'- -cCAGCGGAGUC-CuuGGGCAGcgccUUCGc -3'
miRNA:   3'- aaGUCGCCUCGGuGcgCCCGUC----AAGC- -5'
11406 3' -59.6 NC_003085.1 + 27622 0.67 0.38069
Target:  5'- gUguGUGGAGCCugGgGGGC---UCGc -3'
miRNA:   3'- aAguCGCCUCGGugCgCCCGucaAGC- -5'
11406 3' -59.6 NC_003085.1 + 32126 0.67 0.371961
Target:  5'- cUCGGUGGuGCgACGgGGGCGGc--- -3'
miRNA:   3'- aAGUCGCCuCGgUGCgCCCGUCaagc -5'
11406 3' -59.6 NC_003085.1 + 40674 0.67 0.371961
Target:  5'- cUC-GCGGAGCCGC-CGGcGCAGg--- -3'
miRNA:   3'- aAGuCGCCUCGGUGcGCC-CGUCaagc -5'
11406 3' -59.6 NC_003085.1 + 18095 0.68 0.3296
Target:  5'- -gCGGcCGGGGUCgagcuucuugucgGCGCGGGCGGgaCGg -3'
miRNA:   3'- aaGUC-GCCUCGG-------------UGCGCCCGUCaaGC- -5'
11406 3' -59.6 NC_003085.1 + 46936 0.68 0.321723
Target:  5'- gUUCGGCgcgcgcaGGGGCCgACGCGGGCAc---- -3'
miRNA:   3'- -AAGUCG-------CCUCGG-UGCGCCCGUcaagc -5'
11406 3' -59.6 NC_003085.1 + 34295 0.68 0.314755
Target:  5'- gUUCcGCcGAGCguCGCGGGCAGggCa -3'
miRNA:   3'- -AAGuCGcCUCGguGCGCCCGUCaaGc -5'
11406 3' -59.6 NC_003085.1 + 11778 0.71 0.209597
Target:  5'- -aCGGCGGcGCCGCGCuccGGGCGugUCGg -3'
miRNA:   3'- aaGUCGCCuCGGUGCG---CCCGUcaAGC- -5'
11406 3' -59.6 NC_003085.1 + 4858 0.71 0.188531
Target:  5'- -gCGGCGGGGCCuuuCGUGGGaCGGggCa -3'
miRNA:   3'- aaGUCGCCUCGGu--GCGCCC-GUCaaGc -5'
11406 3' -59.6 NC_003085.1 + 48406 1.07 0.000401
Target:  5'- aUUCAGCGGAGCCACGCGGGCAGUUCGg -3'
miRNA:   3'- -AAGUCGCCUCGGUGCGCCCGUCAAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.