miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11406 5' -54.3 NC_003085.1 + 48895 0.66 0.679838
Target:  5'- -gCGGgggCCGCCCugcacuucGACGGCCACCc-- -3'
miRNA:   3'- aaGUUaa-GGCGGG--------UUGUCGGUGGcaa -5'
11406 5' -54.3 NC_003085.1 + 49170 0.66 0.657038
Target:  5'- gUCGGaggCCGCCCggUccuGCCGCCGc- -3'
miRNA:   3'- aAGUUaa-GGCGGGuuGu--CGGUGGCaa -5'
11406 5' -54.3 NC_003085.1 + 24037 0.66 0.657038
Target:  5'- cUCAGUgCUGCUCAGCcGUUGCCGUUg -3'
miRNA:   3'- aAGUUAaGGCGGGUUGuCGGUGGCAA- -5'
11406 5' -54.3 NC_003085.1 + 37220 0.66 0.645595
Target:  5'- cUUCAAUUCUggcgGCCCAGCcGCCGCg--- -3'
miRNA:   3'- -AAGUUAAGG----CGGGUUGuCGGUGgcaa -5'
11406 5' -54.3 NC_003085.1 + 33841 0.67 0.634138
Target:  5'- -----cUCCGCCC---GGCCACCGg- -3'
miRNA:   3'- aaguuaAGGCGGGuugUCGGUGGCaa -5'
11406 5' -54.3 NC_003085.1 + 37497 0.67 0.622679
Target:  5'- -cCAA-UCCGCUC-ACAGCCGCCc-- -3'
miRNA:   3'- aaGUUaAGGCGGGuUGUCGGUGGcaa -5'
11406 5' -54.3 NC_003085.1 + 13742 0.67 0.611229
Target:  5'- -gCGAagCCGCCCAACGGgagGCCGUUg -3'
miRNA:   3'- aaGUUaaGGCGGGUUGUCgg-UGGCAA- -5'
11406 5' -54.3 NC_003085.1 + 658 0.67 0.610086
Target:  5'- cUCGAgcaCCGCCCGGacgucgcCGGCCACCu-- -3'
miRNA:   3'- aAGUUaa-GGCGGGUU-------GUCGGUGGcaa -5'
11406 5' -54.3 NC_003085.1 + 37153 0.67 0.5998
Target:  5'- gUCGGUgugcgCCGCaacCCAGCGGaCCACCGc- -3'
miRNA:   3'- aAGUUAa----GGCG---GGUUGUC-GGUGGCaa -5'
11406 5' -54.3 NC_003085.1 + 43911 0.67 0.588399
Target:  5'- cUUCAGcaugUCCGCCaaccgGAUGGCCGCCGc- -3'
miRNA:   3'- -AAGUUa---AGGCGGg----UUGUCGGUGGCaa -5'
11406 5' -54.3 NC_003085.1 + 35093 0.68 0.565728
Target:  5'- cUCA--UCCGCgCAGcCAGCCGCUGg- -3'
miRNA:   3'- aAGUuaAGGCGgGUU-GUCGGUGGCaa -5'
11406 5' -54.3 NC_003085.1 + 47503 0.68 0.543289
Target:  5'- gUUCcgugUCCGCCacugcgauACGGCCACCGg- -3'
miRNA:   3'- -AAGuua-AGGCGGgu------UGUCGGUGGCaa -5'
11406 5' -54.3 NC_003085.1 + 40415 0.69 0.499371
Target:  5'- -aCAccugCCGCCCGuGCAGCCGCgGUg -3'
miRNA:   3'- aaGUuaa-GGCGGGU-UGUCGGUGgCAa -5'
11406 5' -54.3 NC_003085.1 + 26972 0.69 0.478006
Target:  5'- gUCGGUgCCGUCCGuc-GCCACCGUg -3'
miRNA:   3'- aAGUUAaGGCGGGUuguCGGUGGCAa -5'
11406 5' -54.3 NC_003085.1 + 2833 0.69 0.478006
Target:  5'- -aCAcgUCUGCCCGGCAGCCgGgCGa- -3'
miRNA:   3'- aaGUuaAGGCGGGUUGUCGG-UgGCaa -5'
11406 5' -54.3 NC_003085.1 + 2656 0.69 0.457101
Target:  5'- --uGAUgCCGCCCAAggacgUGGCCACCGUc -3'
miRNA:   3'- aagUUAaGGCGGGUU-----GUCGGUGGCAa -5'
11406 5' -54.3 NC_003085.1 + 35707 0.71 0.388083
Target:  5'- -cCAGUgUUCGUCCAACGGCCucCCGUUg -3'
miRNA:   3'- aaGUUA-AGGCGGGUUGUCGGu-GGCAA- -5'
11406 5' -54.3 NC_003085.1 + 14143 0.71 0.388083
Target:  5'- gUCGuAUUCCuCaCCGACAGCCGCCGc- -3'
miRNA:   3'- aAGU-UAAGGcG-GGUUGUCGGUGGCaa -5'
11406 5' -54.3 NC_003085.1 + 3373 0.72 0.343162
Target:  5'- -----aUCCGaCCCAGCGGCuCGCCGUc -3'
miRNA:   3'- aaguuaAGGC-GGGUUGUCG-GUGGCAa -5'
11406 5' -54.3 NC_003085.1 + 46189 0.72 0.334639
Target:  5'- aUUCGAg--CGCCCAACGGCCuCCGg- -3'
miRNA:   3'- -AAGUUaagGCGGGUUGUCGGuGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.