miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11407 5' -59.3 NC_003085.1 + 12220 0.68 0.356651
Target:  5'- uGGaAGGGAUGgggcuccaaggcuGGGCCCAuGCGGAAc -3'
miRNA:   3'- cCC-UCCCUACau-----------CUCGGGUcCGCCUU- -5'
11407 5' -59.3 NC_003085.1 + 9209 0.7 0.250028
Target:  5'- gGGGGcGGGAcGUAG-GCCCcGGCGGc- -3'
miRNA:   3'- -CCCU-CCCUaCAUCuCGGGuCCGCCuu -5'
11407 5' -59.3 NC_003085.1 + 28416 0.72 0.182527
Target:  5'- cGGGAGGGcUGUugugAGAGUCgAGGCuGGAc -3'
miRNA:   3'- -CCCUCCCuACA----UCUCGGgUCCG-CCUu -5'
11407 5' -59.3 NC_003085.1 + 48101 1.08 0.000352
Target:  5'- cGGGAGGGAUGUAGAGCCCAGGCGGAAg -3'
miRNA:   3'- -CCCUCCCUACAUCUCGGGUCCGCCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.