miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 3' -56.1 NC_003085.1 + 519 0.66 0.655147
Target:  5'- gCCG-GUGUCugUCCUCGUGaCGacguuCGGCAg -3'
miRNA:   3'- -GGCaCGCAG--AGGAGUAC-GUgu---GCCGU- -5'
11408 3' -56.1 NC_003085.1 + 20269 0.66 0.655147
Target:  5'- gCGUGCG-CUCCgCGUcCuCGCGGCGc -3'
miRNA:   3'- gGCACGCaGAGGaGUAcGuGUGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 16201 0.66 0.633165
Target:  5'- gCCGUgaccGCG-CUCCUCGccgUGCuccucauCGCGGCu -3'
miRNA:   3'- -GGCA----CGCaGAGGAGU---ACGu------GUGCCGu -5'
11408 3' -56.1 NC_003085.1 + 49254 0.66 0.633165
Target:  5'- cCCGcucCGUCUCUUCcUGCGuCAUGGCc -3'
miRNA:   3'- -GGCac-GCAGAGGAGuACGU-GUGCCGu -5'
11408 3' -56.1 NC_003085.1 + 39272 0.66 0.622167
Target:  5'- gCUGcGCGcCUCCUCuacgGCGCuGCGGUg -3'
miRNA:   3'- -GGCaCGCaGAGGAGua--CGUG-UGCCGu -5'
11408 3' -56.1 NC_003085.1 + 25235 0.66 0.622167
Target:  5'- aCCG-GCGcCgcCCUgGUGCGCuccGCGGCGg -3'
miRNA:   3'- -GGCaCGCaGa-GGAgUACGUG---UGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 37192 0.67 0.611178
Target:  5'- gCGUGCGagUUC-CAUGCAC-CGGUc -3'
miRNA:   3'- gGCACGCagAGGaGUACGUGuGCCGu -5'
11408 3' -56.1 NC_003085.1 + 23848 0.67 0.600208
Target:  5'- uUCGU-CGUCUCCUCcucgucGCGCuuGGCGu -3'
miRNA:   3'- -GGCAcGCAGAGGAGua----CGUGugCCGU- -5'
11408 3' -56.1 NC_003085.1 + 41236 0.67 0.589264
Target:  5'- aCGUGCGg--CCUCuacaacGCcacGCGCGGCAg -3'
miRNA:   3'- gGCACGCagaGGAGua----CG---UGUGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 3537 0.67 0.578357
Target:  5'- cCCGUgGCGacucuggCUgCCUCucugggcGCACACGGCGa -3'
miRNA:   3'- -GGCA-CGCa------GA-GGAGua-----CGUGUGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 45557 0.68 0.545932
Target:  5'- gCGUGUcaaCUCCUCGcGCAgCGCGGCc -3'
miRNA:   3'- gGCACGca-GAGGAGUaCGU-GUGCCGu -5'
11408 3' -56.1 NC_003085.1 + 36443 0.68 0.51097
Target:  5'- aCCGUGCGgagggCggcgCCUCAUGgcgagguagugccaCugGCGGCu -3'
miRNA:   3'- -GGCACGCa----Ga---GGAGUAC--------------GugUGCCGu -5'
11408 3' -56.1 NC_003085.1 + 28999 0.69 0.472929
Target:  5'- gCGUGUGccacuUCUCCagCGgcucGCGCGCGGCGg -3'
miRNA:   3'- gGCACGC-----AGAGGa-GUa---CGUGUGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 1561 0.69 0.443161
Target:  5'- gCCGUgcGCGUCgCCUgCAguUGCGgCGCGGCGu -3'
miRNA:   3'- -GGCA--CGCAGaGGA-GU--ACGU-GUGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 6006 0.7 0.423913
Target:  5'- gCGUGaCGUCaUCgCUCA-GCAgCGCGGCAc -3'
miRNA:   3'- gGCAC-GCAG-AG-GAGUaCGU-GUGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 29757 0.72 0.311947
Target:  5'- gCCGUcGCGcCccaCCUCGUGCGCACuGGCc -3'
miRNA:   3'- -GGCA-CGCaGa--GGAGUACGUGUG-CCGu -5'
11408 3' -56.1 NC_003085.1 + 47480 0.73 0.275283
Target:  5'- -aGUGgaCGggCUgCUCAUGCACGCGGCGg -3'
miRNA:   3'- ggCAC--GCa-GAgGAGUACGUGUGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 34323 0.73 0.254986
Target:  5'- -aGUGCGUCUCgugCUCGUcGCACcacGCGGCGc -3'
miRNA:   3'- ggCACGCAGAG---GAGUA-CGUG---UGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 17558 0.75 0.218089
Target:  5'- cCCGUGCcucGUCcgCCUCGUucCGCACGGCAu -3'
miRNA:   3'- -GGCACG---CAGa-GGAGUAc-GUGUGCCGU- -5'
11408 3' -56.1 NC_003085.1 + 47861 1.1 0.000661
Target:  5'- gCCGUGCGUCUCCUCAUGCACACGGCAc -3'
miRNA:   3'- -GGCACGCAGAGGAGUACGUGUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.