miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 29106 0.66 0.389594
Target:  5'- gGCGUCaGCAGCgGCGacGCGGCGCGgAa -3'
miRNA:   3'- gCGCGG-CGUUGaCGUc-CGCUGCGCgU- -5'
11408 5' -60.9 NC_003085.1 + 23572 0.66 0.372249
Target:  5'- gGCGuuGCGAUgucGCuGGagGACGCGUAc -3'
miRNA:   3'- gCGCggCGUUGa--CGuCCg-CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 40360 0.66 0.372249
Target:  5'- gGCaaGCCGCuGCUGCccGCGGCGCu-- -3'
miRNA:   3'- gCG--CGGCGuUGACGucCGCUGCGcgu -5'
11408 5' -60.9 NC_003085.1 + 11497 0.66 0.389594
Target:  5'- aCGCaCCaCAcgaauCUGCGGGUGugGUGCGg -3'
miRNA:   3'- -GCGcGGcGUu----GACGUCCGCugCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 18758 0.66 0.372249
Target:  5'- aGcCGCCGCuGgaGCGGGCGAUGgacaaaGCGa -3'
miRNA:   3'- gC-GCGGCGuUgaCGUCCGCUGCg-----CGU- -5'
11408 5' -60.9 NC_003085.1 + 41211 0.66 0.363776
Target:  5'- gGCGuuG-GACUGCucuggcacGGUGACGUGCGg -3'
miRNA:   3'- gCGCggCgUUGACGu-------CCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 14353 0.66 0.407459
Target:  5'- gGgGCCGgAcCUGCcacucaacgGGGUGACGuCGCAg -3'
miRNA:   3'- gCgCGGCgUuGACG---------UCCGCUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 43534 0.66 0.407459
Target:  5'- gGCGCCGa------AGGCGGCGCGUc -3'
miRNA:   3'- gCGCGGCguugacgUCCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 26133 0.66 0.389594
Target:  5'- aCGCgGCCGUggaacucgGGCUGCuGGCcaccGACGuCGCGg -3'
miRNA:   3'- -GCG-CGGCG--------UUGACGuCCG----CUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 32855 0.66 0.372249
Target:  5'- gCGCGCCGCGggACcGCccgggAGGCccaGCGCAu -3'
miRNA:   3'- -GCGCGGCGU--UGaCG-----UCCGcugCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 22531 0.66 0.372249
Target:  5'- aGCGCCGCGcguACaUGCAGGCcaACG-GCc -3'
miRNA:   3'- gCGCGGCGU---UG-ACGUCCGc-UGCgCGu -5'
11408 5' -60.9 NC_003085.1 + 47723 0.66 0.372249
Target:  5'- uGCGCCu--GCUGaCGGGCGcgguGCGCGUn -3'
miRNA:   3'- gCGCGGcguUGAC-GUCCGC----UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 17849 0.66 0.363776
Target:  5'- aGUGCUGguGCccGCAGGCGcCGUuuGCAg -3'
miRNA:   3'- gCGCGGCguUGa-CGUCCGCuGCG--CGU- -5'
11408 5' -60.9 NC_003085.1 + 3139 0.66 0.397569
Target:  5'- gCGCGUCG-AAgaGUGGGCGcucgcugacuuccGCGCGCAc -3'
miRNA:   3'- -GCGCGGCgUUgaCGUCCGC-------------UGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 14666 0.66 0.407459
Target:  5'- aGCGCgGCAAggacUUGgAGGCgccGugGCGCu -3'
miRNA:   3'- gCGCGgCGUU----GACgUCCG---CugCGCGu -5'
11408 5' -60.9 NC_003085.1 + 39639 0.66 0.363776
Target:  5'- aGUGgCGCAACUucGCGacgacaccGaGCGGCGCGCGc -3'
miRNA:   3'- gCGCgGCGUUGA--CGU--------C-CGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 48921 0.66 0.363776
Target:  5'- uCGCGCCGUucgccaauCUccGCgaGGGCaGCGCGCAu -3'
miRNA:   3'- -GCGCGGCGuu------GA--CG--UCCGcUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 48507 0.66 0.355437
Target:  5'- aGCGCUGCGACcuccuucucgGC-GGCGAgGgCGCGg -3'
miRNA:   3'- gCGCGGCGUUGa---------CGuCCGCUgC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 9162 0.66 0.398462
Target:  5'- uCGcCGCCGCGcaguccugaguCUGUGGGuCGGCGCGgGu -3'
miRNA:   3'- -GC-GCGGCGUu----------GACGUCC-GCUGCGCgU- -5'
11408 5' -60.9 NC_003085.1 + 24799 0.66 0.389594
Target:  5'- gGUGCCGCu-CaGCccgucGCGGCGCGCGg -3'
miRNA:   3'- gCGCGGCGuuGaCGuc---CGCUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.