Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 47896 | 1 | 0.001132 |
Target: 5'- cCGCGCCGC-ACUGCAGGCGACGCGCAc -3' miRNA: 3'- -GCGCGGCGuUGACGUCCGCUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 3706 | 0.8 | 0.037034 |
Target: 5'- cCGCGuCCGguGCUGguGGUGACGaCGCAg -3' miRNA: 3'- -GCGC-GGCguUGACguCCGCUGC-GCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 32975 | 0.8 | 0.039218 |
Target: 5'- gGCGCCGuCAGCgacgGgaAGGCGGCGCGCAg -3' miRNA: 3'- gCGCGGC-GUUGa---Cg-UCCGCUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 20606 | 0.78 | 0.052174 |
Target: 5'- aGCGCCGCGGaaGuCGGGCGGCGCGgGu -3' miRNA: 3'- gCGCGGCGUUgaC-GUCCGCUGCGCgU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 37065 | 0.77 | 0.071031 |
Target: 5'- gGCGCCGaCGACgugcggaUGCAGGUggacGGCGCGCAg -3' miRNA: 3'- gCGCGGC-GUUG-------ACGUCCG----CUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 30807 | 0.76 | 0.073264 |
Target: 5'- gCGCGCCGCAGCaaucaccGCGGGCGACaagGCAa -3' miRNA: 3'- -GCGCGGCGUUGa------CGUCCGCUGcg-CGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 48399 | 0.76 | 0.084289 |
Target: 5'- aGCGCCGCAuuguCUGCcucGGCGGCGCugGCu -3' miRNA: 3'- gCGCGGCGUu---GACGu--CCGCUGCG--CGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 3626 | 0.75 | 0.08888 |
Target: 5'- uGCGCCGCGACUgGCuGGCcgagaggGACGCuGCAc -3' miRNA: 3'- gCGCGGCGUUGA-CGuCCG-------CUGCG-CGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 7469 | 0.75 | 0.096885 |
Target: 5'- gGCGUCGCGccucacGCUGgAGGUGACGgGCGu -3' miRNA: 3'- gCGCGGCGU------UGACgUCCGCUGCgCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 15210 | 0.74 | 0.111246 |
Target: 5'- cCGCGCCGCGGaaGUGGGCGAgguggacuUGCGCc -3' miRNA: 3'- -GCGCGGCGUUgaCGUCCGCU--------GCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 10617 | 0.74 | 0.111246 |
Target: 5'- gCGCGCCGUcGCaGUGGGaCGACGCgGCAg -3' miRNA: 3'- -GCGCGGCGuUGaCGUCC-GCUGCG-CGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 29191 | 0.73 | 0.120796 |
Target: 5'- aGCGCCGCGAggacGCGGaGCGcACGCGCc -3' miRNA: 3'- gCGCGGCGUUga--CGUC-CGC-UGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 26457 | 0.73 | 0.127581 |
Target: 5'- gGCGCCagGACUGC-GGCG-CGCGCAc -3' miRNA: 3'- gCGCGGcgUUGACGuCCGCuGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 33191 | 0.73 | 0.138047 |
Target: 5'- uCGCGCCaGUAGCggGCguccuggAGGCGGCgGCGCAg -3' miRNA: 3'- -GCGCGG-CGUUGa-CG-------UCCGCUG-CGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 32168 | 0.72 | 0.142219 |
Target: 5'- gGCGUCGgccaGGCUGCGccaguGGUGGCGCGCGu -3' miRNA: 3'- gCGCGGCg---UUGACGU-----CCGCUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 20290 | 0.72 | 0.146111 |
Target: 5'- gGCGCUGCcACUGCGGguccaaccGCGACGuCGCc -3' miRNA: 3'- gCGCGGCGuUGACGUC--------CGCUGC-GCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 22758 | 0.72 | 0.146111 |
Target: 5'- cCGCGCCGaCGACgcccgccgcGguGGCGACG-GCAg -3' miRNA: 3'- -GCGCGGC-GUUGa--------CguCCGCUGCgCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 47751 | 0.72 | 0.151724 |
Target: 5'- aGCGUCGCAauucgacggccaggcGCUcGCAGGCGACuuGUGCu -3' miRNA: 3'- gCGCGGCGU---------------UGA-CGUCCGCUG--CGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 1566 | 0.72 | 0.158378 |
Target: 5'- gCGCGUCGC--CUGCAGuuGCGGCGCgGCGu -3' miRNA: 3'- -GCGCGGCGuuGACGUC--CGCUGCG-CGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 20089 | 0.71 | 0.171567 |
Target: 5'- gCGCGCUGUGACgugccGCAGGUGGCGgGg- -3' miRNA: 3'- -GCGCGGCGUUGa----CGUCCGCUGCgCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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