miRNA display CGI


Results 1 - 20 of 135 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 47896 1 0.001132
Target:  5'- cCGCGCCGC-ACUGCAGGCGACGCGCAc -3'
miRNA:   3'- -GCGCGGCGuUGACGUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 3706 0.8 0.037034
Target:  5'- cCGCGuCCGguGCUGguGGUGACGaCGCAg -3'
miRNA:   3'- -GCGC-GGCguUGACguCCGCUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 32975 0.8 0.039218
Target:  5'- gGCGCCGuCAGCgacgGgaAGGCGGCGCGCAg -3'
miRNA:   3'- gCGCGGC-GUUGa---Cg-UCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 20606 0.78 0.052174
Target:  5'- aGCGCCGCGGaaGuCGGGCGGCGCGgGu -3'
miRNA:   3'- gCGCGGCGUUgaC-GUCCGCUGCGCgU- -5'
11408 5' -60.9 NC_003085.1 + 37065 0.77 0.071031
Target:  5'- gGCGCCGaCGACgugcggaUGCAGGUggacGGCGCGCAg -3'
miRNA:   3'- gCGCGGC-GUUG-------ACGUCCG----CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 30807 0.76 0.073264
Target:  5'- gCGCGCCGCAGCaaucaccGCGGGCGACaagGCAa -3'
miRNA:   3'- -GCGCGGCGUUGa------CGUCCGCUGcg-CGU- -5'
11408 5' -60.9 NC_003085.1 + 48399 0.76 0.084289
Target:  5'- aGCGCCGCAuuguCUGCcucGGCGGCGCugGCu -3'
miRNA:   3'- gCGCGGCGUu---GACGu--CCGCUGCG--CGu -5'
11408 5' -60.9 NC_003085.1 + 3626 0.75 0.08888
Target:  5'- uGCGCCGCGACUgGCuGGCcgagaggGACGCuGCAc -3'
miRNA:   3'- gCGCGGCGUUGA-CGuCCG-------CUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 7469 0.75 0.096885
Target:  5'- gGCGUCGCGccucacGCUGgAGGUGACGgGCGu -3'
miRNA:   3'- gCGCGGCGU------UGACgUCCGCUGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 15210 0.74 0.111246
Target:  5'- cCGCGCCGCGGaaGUGGGCGAgguggacuUGCGCc -3'
miRNA:   3'- -GCGCGGCGUUgaCGUCCGCU--------GCGCGu -5'
11408 5' -60.9 NC_003085.1 + 10617 0.74 0.111246
Target:  5'- gCGCGCCGUcGCaGUGGGaCGACGCgGCAg -3'
miRNA:   3'- -GCGCGGCGuUGaCGUCC-GCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 29191 0.73 0.120796
Target:  5'- aGCGCCGCGAggacGCGGaGCGcACGCGCc -3'
miRNA:   3'- gCGCGGCGUUga--CGUC-CGC-UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 26457 0.73 0.127581
Target:  5'- gGCGCCagGACUGC-GGCG-CGCGCAc -3'
miRNA:   3'- gCGCGGcgUUGACGuCCGCuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 33191 0.73 0.138047
Target:  5'- uCGCGCCaGUAGCggGCguccuggAGGCGGCgGCGCAg -3'
miRNA:   3'- -GCGCGG-CGUUGa-CG-------UCCGCUG-CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 32168 0.72 0.142219
Target:  5'- gGCGUCGgccaGGCUGCGccaguGGUGGCGCGCGu -3'
miRNA:   3'- gCGCGGCg---UUGACGU-----CCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 20290 0.72 0.146111
Target:  5'- gGCGCUGCcACUGCGGguccaaccGCGACGuCGCc -3'
miRNA:   3'- gCGCGGCGuUGACGUC--------CGCUGC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 22758 0.72 0.146111
Target:  5'- cCGCGCCGaCGACgcccgccgcGguGGCGACG-GCAg -3'
miRNA:   3'- -GCGCGGC-GUUGa--------CguCCGCUGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 47751 0.72 0.151724
Target:  5'- aGCGUCGCAauucgacggccaggcGCUcGCAGGCGACuuGUGCu -3'
miRNA:   3'- gCGCGGCGU---------------UGA-CGUCCGCUG--CGCGu -5'
11408 5' -60.9 NC_003085.1 + 1566 0.72 0.158378
Target:  5'- gCGCGUCGC--CUGCAGuuGCGGCGCgGCGu -3'
miRNA:   3'- -GCGCGGCGuuGACGUC--CGCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 20089 0.71 0.171567
Target:  5'- gCGCGCUGUGACgugccGCAGGUGGCGgGg- -3'
miRNA:   3'- -GCGCGGCGUUGa----CGUCCGCUGCgCgu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.