Results 1 - 20 of 135 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 530 | 0.66 | 0.371396 |
Target: 5'- gCGCGCUGCccucgcggagauuGGCgaacgGCgcgAGGCGGCGCGg- -3' miRNA: 3'- -GCGCGGCG-------------UUGa----CG---UCCGCUGCGCgu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 731 | 0.69 | 0.253039 |
Target: 5'- aCGCGCCGCucACgGaCAGGCGAgagGUGCu -3' miRNA: 3'- -GCGCGGCGu-UGaC-GUCCGCUg--CGCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 1049 | 0.67 | 0.323445 |
Target: 5'- gGCGCCG-AACUGCccGCGugGCu-- -3' miRNA: 3'- gCGCGGCgUUGACGucCGCugCGcgu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 1059 | 0.67 | 0.308273 |
Target: 5'- aGCGCCGCcgagGCAGacaauGCGGCGCuGCu -3' miRNA: 3'- gCGCGGCGuugaCGUC-----CGCUGCG-CGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 1324 | 0.68 | 0.28584 |
Target: 5'- cCGCGCUGgAggaggcagcccagACUGCuGGCGACGuUGCc -3' miRNA: 3'- -GCGCGGCgU-------------UGACGuCCGCUGC-GCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 1566 | 0.72 | 0.158378 |
Target: 5'- gCGCGUCGC--CUGCAGuuGCGGCGCgGCGu -3' miRNA: 3'- -GCGCGGCGuuGACGUC--CGCUGCG-CGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 2119 | 0.66 | 0.380855 |
Target: 5'- uGuCGCaCGCAuggauggGCaaGGGCGGCGCGCu -3' miRNA: 3'- gC-GCG-GCGUuga----CG--UCCGCUGCGCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 2410 | 0.67 | 0.339168 |
Target: 5'- -cCGCCG-AGCUGguGGUgacgaaGACGCGCu -3' miRNA: 3'- gcGCGGCgUUGACguCCG------CUGCGCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 2633 | 0.7 | 0.206208 |
Target: 5'- gGCGUCGCAACUcggcgGCgAGGUGAUGcCGCc -3' miRNA: 3'- gCGCGGCGUUGA-----CG-UCCGCUGC-GCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 3139 | 0.66 | 0.397569 |
Target: 5'- gCGCGUCG-AAgaGUGGGCGcucgcugacuuccGCGCGCAc -3' miRNA: 3'- -GCGCGGCgUUgaCGUCCGC-------------UGCGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 3489 | 0.67 | 0.330452 |
Target: 5'- gGCG-CGCAuCUGCcgccccaAGGCGACGCuGUAc -3' miRNA: 3'- gCGCgGCGUuGACG-------UCCGCUGCG-CGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 3582 | 0.67 | 0.308273 |
Target: 5'- gCGCGCCuc-GCUGCcgAGGCGGCGaacugGCAg -3' miRNA: 3'- -GCGCGGcguUGACG--UCCGCUGCg----CGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 3626 | 0.75 | 0.08888 |
Target: 5'- uGCGCCGCGACUgGCuGGCcgagaggGACGCuGCAc -3' miRNA: 3'- gCGCGGCGUUGA-CGuCCG-------CUGCG-CGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 3691 | 0.67 | 0.347234 |
Target: 5'- uGCGUugggaUGCGGCcacGCAGcGCGACGUGCc -3' miRNA: 3'- gCGCG-----GCGUUGa--CGUC-CGCUGCGCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 3706 | 0.8 | 0.037034 |
Target: 5'- cCGCGuCCGguGCUGguGGUGACGaCGCAg -3' miRNA: 3'- -GCGC-GGCguUGACguCCGCUGC-GCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 4093 | 0.67 | 0.347234 |
Target: 5'- aGCGcCCGCAcucgccGCUGgaguuGGGCGcCGCGCu -3' miRNA: 3'- gCGC-GGCGU------UGACg----UCCGCuGCGCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 4138 | 0.68 | 0.293649 |
Target: 5'- aGCGCCGCucuacggagcGACUGCuGGCGcaacucCGCGa- -3' miRNA: 3'- gCGCGGCG----------UUGACGuCCGCu-----GCGCgu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 5313 | 0.7 | 0.222825 |
Target: 5'- gCGCGCCGUc-CUGaAGGCGACcgagaaGCGCGu -3' miRNA: 3'- -GCGCGGCGuuGACgUCCGCUG------CGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 5525 | 0.7 | 0.206208 |
Target: 5'- aCGUGCuCGC-ACUGguGcGCGaaguGCGCGCAa -3' miRNA: 3'- -GCGCG-GCGuUGACguC-CGC----UGCGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 5948 | 0.66 | 0.395788 |
Target: 5'- gGCGCCGUucccguccacgccgGGCUGCuggAGGCGGUGgGCc -3' miRNA: 3'- gCGCGGCG--------------UUGACG---UCCGCUGCgCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home