Results 1 - 20 of 135 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 10821 | 0.7 | 0.222825 |
Target: 5'- aCGCGCaccgggcaGCGACUGCGGGaguggGAUGCGa- -3' miRNA: 3'- -GCGCGg-------CGUUGACGUCCg----CUGCGCgu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 34910 | 0.71 | 0.180898 |
Target: 5'- gGCGUgGCGGCcuacgaguggUGCAGGCGcACGCgGCGg -3' miRNA: 3'- gCGCGgCGUUG----------ACGUCCGC-UGCG-CGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 29138 | 0.71 | 0.185241 |
Target: 5'- gGCGauugaguCCGCcuACUcGCAGGCGACGuCGCGg -3' miRNA: 3'- gCGC-------GGCGu-UGA-CGUCCGCUGC-GCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 28473 | 0.71 | 0.185729 |
Target: 5'- gGCGCUcacCGGCUGCGuGCuGACGCGCAa -3' miRNA: 3'- gCGCGGc--GUUGACGUcCG-CUGCGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 8742 | 0.71 | 0.189179 |
Target: 5'- gCGCGCCuucguggccaaGCGGCUcGUcacuaacgaggcgaAGGUGGCGCGCAg -3' miRNA: 3'- -GCGCGG-----------CGUUGA-CG--------------UCCGCUGCGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 39603 | 0.71 | 0.190674 |
Target: 5'- gCGCGUCGCGgaGCgcaccgaGCAGGUGGC-CGCAg -3' miRNA: 3'- -GCGCGGCGU--UGa------CGUCCGCUGcGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 30680 | 0.7 | 0.195735 |
Target: 5'- uGCGCCucGCAuugGCUGCugaggAGGCGAagcgGCGCAa -3' miRNA: 3'- gCGCGG--CGU---UGACG-----UCCGCUg---CGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 5525 | 0.7 | 0.206208 |
Target: 5'- aCGUGCuCGC-ACUGguGcGCGaaguGCGCGCAa -3' miRNA: 3'- -GCGCG-GCGuUGACguC-CGC----UGCGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 5313 | 0.7 | 0.222825 |
Target: 5'- gCGCGCCGUc-CUGaAGGCGACcgagaaGCGCGu -3' miRNA: 3'- -GCGCGGCGuuGACgUCCGCUG------CGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 12053 | 0.71 | 0.175247 |
Target: 5'- uGCGCCGCuucgcgggcuaccccGgggcgauucucgucuACgggGCGGGUGACGCGCGc -3' miRNA: 3'- gCGCGGCG---------------U---------------UGa--CGUCCGCUGCGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 20089 | 0.71 | 0.171567 |
Target: 5'- gCGCGCUGUGACgugccGCAGGUGGCGgGg- -3' miRNA: 3'- -GCGCGGCGUUGa----CGUCCGCUGCgCgu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 1566 | 0.72 | 0.158378 |
Target: 5'- gCGCGUCGC--CUGCAGuuGCGGCGCgGCGu -3' miRNA: 3'- -GCGCGGCGuuGACGUC--CGCUGCG-CGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 30807 | 0.76 | 0.073264 |
Target: 5'- gCGCGCCGCAGCaaucaccGCGGGCGACaagGCAa -3' miRNA: 3'- -GCGCGGCGUUGa------CGUCCGCUGcg-CGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 48399 | 0.76 | 0.084289 |
Target: 5'- aGCGCCGCAuuguCUGCcucGGCGGCGCugGCu -3' miRNA: 3'- gCGCGGCGUu---GACGu--CCGCUGCG--CGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 7469 | 0.75 | 0.096885 |
Target: 5'- gGCGUCGCGccucacGCUGgAGGUGACGgGCGu -3' miRNA: 3'- gCGCGGCGU------UGACgUCCGCUGCgCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 15210 | 0.74 | 0.111246 |
Target: 5'- cCGCGCCGCGGaaGUGGGCGAgguggacuUGCGCc -3' miRNA: 3'- -GCGCGGCGUUgaCGUCCGCU--------GCGCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 29191 | 0.73 | 0.120796 |
Target: 5'- aGCGCCGCGAggacGCGGaGCGcACGCGCc -3' miRNA: 3'- gCGCGGCGUUga--CGUC-CGC-UGCGCGu -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 32168 | 0.72 | 0.142219 |
Target: 5'- gGCGUCGgccaGGCUGCGccaguGGUGGCGCGCGu -3' miRNA: 3'- gCGCGGCg---UUGACGU-----CCGCUGCGCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 22758 | 0.72 | 0.146111 |
Target: 5'- cCGCGCCGaCGACgcccgccgcGguGGCGACG-GCAg -3' miRNA: 3'- -GCGCGGC-GUUGa--------CguCCGCUGCgCGU- -5' |
|||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 47751 | 0.72 | 0.151724 |
Target: 5'- aGCGUCGCAauucgacggccaggcGCUcGCAGGCGACuuGUGCu -3' miRNA: 3'- gCGCGGCGU---------------UGA-CGUCCGCUG--CGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home