miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 18758 0.66 0.372249
Target:  5'- aGcCGCCGCuGgaGCGGGCGAUGgacaaaGCGa -3'
miRNA:   3'- gC-GCGGCGuUgaCGUCCGCUGCg-----CGU- -5'
11408 5' -60.9 NC_003085.1 + 23572 0.66 0.372249
Target:  5'- gGCGuuGCGAUgucGCuGGagGACGCGUAc -3'
miRNA:   3'- gCGCggCGUUGa--CGuCCg-CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 39114 0.66 0.372249
Target:  5'- aGCGuCCGCGG-UGCcucccgggAGGCGACGUgGCGg -3'
miRNA:   3'- gCGC-GGCGUUgACG--------UCCGCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 8817 0.66 0.372249
Target:  5'- gCGCGgCGCAGCcaGCgucaGGGCGACGaggacgGCAg -3'
miRNA:   3'- -GCGCgGCGUUGa-CG----UCCGCUGCg-----CGU- -5'
11408 5' -60.9 NC_003085.1 + 530 0.66 0.371396
Target:  5'- gCGCGCUGCccucgcggagauuGGCgaacgGCgcgAGGCGGCGCGg- -3'
miRNA:   3'- -GCGCGGCG-------------UUGa----CG---UCCGCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 26032 0.66 0.363776
Target:  5'- -cUGCUGCGcCUGCuGGGCGAaGCGCu -3'
miRNA:   3'- gcGCGGCGUuGACG-UCCGCUgCGCGu -5'
11408 5' -60.9 NC_003085.1 + 9143 0.66 0.363776
Target:  5'- aCGCGCCaGCccUUGCcggcgagguagaGGGCGACGCuGCc -3'
miRNA:   3'- -GCGCGG-CGuuGACG------------UCCGCUGCG-CGu -5'
11408 5' -60.9 NC_003085.1 + 9027 0.66 0.363776
Target:  5'- aGgGCUGgaCGGCgGCAGGCaGCGCGCc -3'
miRNA:   3'- gCgCGGC--GUUGaCGUCCGcUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 17849 0.66 0.363776
Target:  5'- aGUGCUGguGCccGCAGGCGcCGUuuGCAg -3'
miRNA:   3'- gCGCGGCguUGa-CGUCCGCuGCG--CGU- -5'
11408 5' -60.9 NC_003085.1 + 39639 0.66 0.363776
Target:  5'- aGUGgCGCAACUucGCGacgacaccGaGCGGCGCGCGc -3'
miRNA:   3'- gCGCgGCGUUGA--CGU--------C-CGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 41211 0.66 0.363776
Target:  5'- gGCGuuG-GACUGCucuggcacGGUGACGUGCGg -3'
miRNA:   3'- gCGCggCgUUGACGu-------CCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 39767 0.66 0.363776
Target:  5'- gGCGCUcCAGuCUGCAGG-GACGC-CAg -3'
miRNA:   3'- gCGCGGcGUU-GACGUCCgCUGCGcGU- -5'
11408 5' -60.9 NC_003085.1 + 48921 0.66 0.363776
Target:  5'- uCGCGCCGUucgccaauCUccGCgaGGGCaGCGCGCAu -3'
miRNA:   3'- -GCGCGGCGuu------GA--CG--UCCGcUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 12385 0.66 0.362936
Target:  5'- gCGCGCCGUccacCUGCAuccgcacgucgucGGCGccaGCGCGg -3'
miRNA:   3'- -GCGCGGCGuu--GACGU-------------CCGCug-CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 27353 0.66 0.355437
Target:  5'- gGCGCCGgGcuCUGCuGGGCGGCcugcuucuGCGCc -3'
miRNA:   3'- gCGCGGCgUu-GACG-UCCGCUG--------CGCGu -5'
11408 5' -60.9 NC_003085.1 + 43463 0.66 0.355437
Target:  5'- cCGCGCC-CAGCcGUAGGCGA-GC-CAa -3'
miRNA:   3'- -GCGCGGcGUUGaCGUCCGCUgCGcGU- -5'
11408 5' -60.9 NC_003085.1 + 48507 0.66 0.355437
Target:  5'- aGCGCUGCGACcuccuucucgGC-GGCGAgGgCGCGg -3'
miRNA:   3'- gCGCGGCGUUGa---------CGuCCGCUgC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 23637 0.67 0.347234
Target:  5'- gGUGCUucaGCAGCgcgaGCAGGC--CGCGCAg -3'
miRNA:   3'- gCGCGG---CGUUGa---CGUCCGcuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 4093 0.67 0.347234
Target:  5'- aGCGcCCGCAcucgccGCUGgaguuGGGCGcCGCGCu -3'
miRNA:   3'- gCGC-GGCGU------UGACg----UCCGCuGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 3691 0.67 0.347234
Target:  5'- uGCGUugggaUGCGGCcacGCAGcGCGACGUGCc -3'
miRNA:   3'- gCGCG-----GCGUUGa--CGUC-CGCUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.