miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 3' -54.4 NC_003085.1 + 47623 1.12 0.00069
Target:  5'- cCGAAACACCACAUGGAGCCGGUGCGCu -3'
miRNA:   3'- -GCUUUGUGGUGUACCUCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 34542 0.92 0.019612
Target:  5'- uGGAGCGCCACGcgcUGGcGGCCGGUGCGCa -3'
miRNA:   3'- gCUUUGUGGUGU---ACC-UCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 45404 0.79 0.155938
Target:  5'- gCGGAGCGCCgucagcgaaaGCAUGGGGCgCGGUGgCGUc -3'
miRNA:   3'- -GCUUUGUGG----------UGUACCUCG-GCCAC-GCG- -5'
11409 3' -54.4 NC_003085.1 + 2208 0.76 0.240446
Target:  5'- aCGAGACACagaaGCcaguggcgcucGUGGAaccGCUGGUGCGCa -3'
miRNA:   3'- -GCUUUGUGg---UG-----------UACCU---CGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 5486 0.75 0.260026
Target:  5'- gCGGAcaACGCgGCGUGGGGCCGG-GcCGUg -3'
miRNA:   3'- -GCUU--UGUGgUGUACCUCGGCCaC-GCG- -5'
11409 3' -54.4 NC_003085.1 + 39494 0.73 0.326544
Target:  5'- uCGAGGCGCU-CGaGaAGCCGGUGCGCc -3'
miRNA:   3'- -GCUUUGUGGuGUaCcUCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 4090 0.72 0.386473
Target:  5'- uGGAGCGcCCGCAcucgccgcUGGAGuuGG-GCGCc -3'
miRNA:   3'- gCUUUGU-GGUGU--------ACCUCggCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 12347 0.72 0.386473
Target:  5'- aGGGcacGCGCCACAUGGuGUCGcUGUGCc -3'
miRNA:   3'- gCUU---UGUGGUGUACCuCGGCcACGCG- -5'
11409 3' -54.4 NC_003085.1 + 40558 0.72 0.414286
Target:  5'- uCGAGGCGCaagGCcuUGGuGgCGGUGCGCa -3'
miRNA:   3'- -GCUUUGUGg--UGu-ACCuCgGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 19684 0.71 0.433497
Target:  5'- aGAAGCauGCCGCca-GGGCCaGUGCGCa -3'
miRNA:   3'- gCUUUG--UGGUGuacCUCGGcCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 25736 0.71 0.433497
Target:  5'- --cGGCGCCACGgugGGGGCCGGgGcCGUc -3'
miRNA:   3'- gcuUUGUGGUGUa--CCUCGGCCaC-GCG- -5'
11409 3' -54.4 NC_003085.1 + 12698 0.71 0.443295
Target:  5'- gGAuGACGCCACGcc--GCUGGUGCGCu -3'
miRNA:   3'- gCU-UUGUGGUGUaccuCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 494 0.7 0.473413
Target:  5'- gCGAGGCugaggGCCuGCGuuUGGAGCCGGUGUc- -3'
miRNA:   3'- -GCUUUG-----UGG-UGU--ACCUCGGCCACGcg -5'
11409 3' -54.4 NC_003085.1 + 26108 0.7 0.473413
Target:  5'- uGggGCugCGCcucGGcGGCCGGcgGCGCu -3'
miRNA:   3'- gCuuUGugGUGua-CC-UCGGCCa-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 13836 0.7 0.483681
Target:  5'- -cAGACGCCGCccagGGAaguGCCGGaUGUGCg -3'
miRNA:   3'- gcUUUGUGGUGua--CCU---CGGCC-ACGCG- -5'
11409 3' -54.4 NC_003085.1 + 2488 0.7 0.494053
Target:  5'- gCGAAACGCUcaagGCGUGGcugacGGaCGGUGUGCc -3'
miRNA:   3'- -GCUUUGUGG----UGUACC-----UCgGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 34963 0.7 0.504527
Target:  5'- gGAGGCGCCucACA-GGaAGCCGaugaccucGUGCGCa -3'
miRNA:   3'- gCUUUGUGG--UGUaCC-UCGGC--------CACGCG- -5'
11409 3' -54.4 NC_003085.1 + 39582 0.7 0.515094
Target:  5'- --cGGCGCCAC-UGGcaAGCUGGaGCGCg -3'
miRNA:   3'- gcuUUGUGGUGuACC--UCGGCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 16316 0.7 0.524681
Target:  5'- aGAGGCGCCACGUacuggucGaGAGCCuGcgGCGCu -3'
miRNA:   3'- gCUUUGUGGUGUA-------C-CUCGGcCa-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 22468 0.69 0.53649
Target:  5'- cCGu-GCACCACucgcGGuagcccAGCCGGcUGCGCa -3'
miRNA:   3'- -GCuuUGUGGUGua--CC------UCGGCC-ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.