miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 47658 1.11 0.000131
Target:  5'- gGGGCGCACCAGUCCCGGCCAGCCAACg -3'
miRNA:   3'- -CCCGCGUGGUCAGGGCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 40801 0.78 0.046168
Target:  5'- cGGCGC-CCAaggccacgcgcGUCCCGGCCGGCCuguACc -3'
miRNA:   3'- cCCGCGuGGU-----------CAGGGCCGGUCGGu--UG- -5'
11409 5' -62 NC_003085.1 + 25276 0.77 0.053176
Target:  5'- cGGCGCGCCcGUCUaccucaccgcgaCGGCCGGCCAGg -3'
miRNA:   3'- cCCGCGUGGuCAGG------------GCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 31754 0.77 0.05626
Target:  5'- cGGGCGCACCuucGUCCCGGaaagUAGCguGCg -3'
miRNA:   3'- -CCCGCGUGGu--CAGGGCCg---GUCGguUG- -5'
11409 5' -62 NC_003085.1 + 34280 0.75 0.078732
Target:  5'- uGGCGCACCGGcucagCCgGGCC-GUCAGCg -3'
miRNA:   3'- cCCGCGUGGUCa----GGgCCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 34405 0.74 0.098247
Target:  5'- gGGGCggacgGCAUgGGgaUUCCGGCCAGCCAAa -3'
miRNA:   3'- -CCCG-----CGUGgUC--AGGGCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 11584 0.72 0.125631
Target:  5'- uGGUGCccACCAGcaccuccgacgUCUGGCCGGCCAGCg -3'
miRNA:   3'- cCCGCG--UGGUCa----------GGGCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 44082 0.72 0.135869
Target:  5'- cGGUuCGCC-GUCCaucgccgCGGCCAGCCGACg -3'
miRNA:   3'- cCCGcGUGGuCAGG-------GCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 43618 0.72 0.136235
Target:  5'- cGGUGCcgucCCAGUCCCGGaCCugcagGGCUGACg -3'
miRNA:   3'- cCCGCGu---GGUCAGGGCC-GG-----UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 38986 0.71 0.147657
Target:  5'- -cGCGCAgCAGg-UCGGCCAGCCGAg -3'
miRNA:   3'- ccCGCGUgGUCagGGCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 35892 0.71 0.147657
Target:  5'- cGGGcCGCGgagucCCAGggccaugCCaCGGCCAGCCcGCa -3'
miRNA:   3'- -CCC-GCGU-----GGUCa------GG-GCCGGUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 5370 0.71 0.151654
Target:  5'- cGGCGCGuCCGGUCCCgucaccgucgaGGCCuacgccGCCAAg -3'
miRNA:   3'- cCCGCGU-GGUCAGGG-----------CCGGu-----CGGUUg -5'
11409 5' -62 NC_003085.1 + 34190 0.71 0.159944
Target:  5'- cGGGCGCGgCGGgugagCUCGGCCgcGGCCu-- -3'
miRNA:   3'- -CCCGCGUgGUCa----GGGCCGG--UCGGuug -5'
11409 5' -62 NC_003085.1 + 45898 0.7 0.168641
Target:  5'- aGGCGCGCUugcgCCCGGCC-GCCuugAGCg -3'
miRNA:   3'- cCCGCGUGGuca-GGGCCGGuCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 8189 0.7 0.168641
Target:  5'- uGGGCGCugugcauggcccGCCAGUCCa-GCCuGCCGcGCg -3'
miRNA:   3'- -CCCGCG------------UGGUCAGGgcCGGuCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 28718 0.7 0.177759
Target:  5'- cGGGCaGCAgCCGGUCCUGGagGGCguACu -3'
miRNA:   3'- -CCCG-CGU-GGUCAGGGCCggUCGguUG- -5'
11409 5' -62 NC_003085.1 + 45818 0.7 0.187312
Target:  5'- -cGC-CACCAGugcagcgucccUCUCGGCCAGCCAGu -3'
miRNA:   3'- ccCGcGUGGUC-----------AGGGCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 26109 0.7 0.187312
Target:  5'- gGGGCuGCGCCucggcggccggcGGcgCuuGGCCGGCCAGa -3'
miRNA:   3'- -CCCG-CGUGG------------UCa-GggCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 36897 0.7 0.187312
Target:  5'- cGGUcCACC-GUCCCaGcCCGGCCAGCg -3'
miRNA:   3'- cCCGcGUGGuCAGGGcC-GGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 29479 0.7 0.192256
Target:  5'- cGGGCGCguaCAGUCCUacugacuaccuuGGCgCGGCCAu- -3'
miRNA:   3'- -CCCGCGug-GUCAGGG------------CCG-GUCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.