miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 410 0.68 0.260936
Target:  5'- -uGCGCucccuggacGCCAGUCUCGGCCGcGUCuACg -3'
miRNA:   3'- ccCGCG---------UGGUCAGGGCCGGU-CGGuUG- -5'
11409 5' -62 NC_003085.1 + 681 0.69 0.224374
Target:  5'- cGGC-CACCuGUCCCGcGuCCGGCCucggGCg -3'
miRNA:   3'- cCCGcGUGGuCAGGGC-C-GGUCGGu---UG- -5'
11409 5' -62 NC_003085.1 + 1938 0.66 0.332414
Target:  5'- cGGGCuCGUCGGUCCCGG-UGGCCGu- -3'
miRNA:   3'- -CCCGcGUGGUCAGGGCCgGUCGGUug -5'
11409 5' -62 NC_003085.1 + 4098 0.68 0.254522
Target:  5'- uGGGUGgGCCgggcGGUCCaGGCU-GCCAGCc -3'
miRNA:   3'- -CCCGCgUGG----UCAGGgCCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 4786 0.66 0.359788
Target:  5'- cGGGUGCuggcauccGCCAGgacgggcccaaagCCCGGCaccgacacucugAGCCAACc -3'
miRNA:   3'- -CCCGCG--------UGGUCa------------GGGCCGg-----------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 5370 0.71 0.151654
Target:  5'- cGGCGCGuCCGGUCCCgucaccgucgaGGCCuacgccGCCAAg -3'
miRNA:   3'- cCCGCGU-GGUCAGGG-----------CCGGu-----CGGUUg -5'
11409 5' -62 NC_003085.1 + 6338 0.69 0.218721
Target:  5'- uGGGCGCGCUcuacgccaaGGcuguUCCCGGCguGCUgcuGGCg -3'
miRNA:   3'- -CCCGCGUGG---------UC----AGGGCCGguCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 8105 0.67 0.27416
Target:  5'- uGGGUG-ACgCGG-CCCGGCCuGCCGu- -3'
miRNA:   3'- -CCCGCgUG-GUCaGGGCCGGuCGGUug -5'
11409 5' -62 NC_003085.1 + 8189 0.7 0.168641
Target:  5'- uGGGCGCugugcauggcccGCCAGUCCa-GCCuGCCGcGCg -3'
miRNA:   3'- -CCCGCG------------UGGUCAGGgcCGGuCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 8623 0.68 0.266822
Target:  5'- aGGUugGCCAG-CCCGGCCgccgucagguacaGGCCGGCc -3'
miRNA:   3'- cCCGcgUGGUCaGGGCCGG-------------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 9170 0.67 0.302207
Target:  5'- aGGGCGaCGCUg--CCCaGGCCGGCgcaGACg -3'
miRNA:   3'- -CCCGC-GUGGucaGGG-CCGGUCGg--UUG- -5'
11409 5' -62 NC_003085.1 + 9382 0.69 0.21319
Target:  5'- aGGGCuGCuUgAGUaCCGGCCAGCgCGGCu -3'
miRNA:   3'- -CCCG-CGuGgUCAgGGCCGGUCG-GUUG- -5'
11409 5' -62 NC_003085.1 + 10469 0.67 0.287915
Target:  5'- uGGCGC-CC---CUCGGCUGGCCGACc -3'
miRNA:   3'- cCCGCGuGGucaGGGCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 10584 0.66 0.355666
Target:  5'- cGGGCGCagcACgAGgcagCCCaGGCUgagacauGGCCAAUg -3'
miRNA:   3'- -CCCGCG---UGgUCa---GGG-CCGG-------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 10641 0.67 0.287915
Target:  5'- gGGGCGCcggcagaggcaGCCaaAGUCCUcggGGCU-GCCGGCg -3'
miRNA:   3'- -CCCGCG-----------UGG--UCAGGG---CCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 11129 0.67 0.309556
Target:  5'- gGGGCGCGCgucgucUCUCGGaUguGCCGACa -3'
miRNA:   3'- -CCCGCGUGguc---AGGGCC-GguCGGUUG- -5'
11409 5' -62 NC_003085.1 + 11132 0.66 0.348329
Target:  5'- -cGCGUGCCAGgCCCGaGCUuuaGGCaCGACg -3'
miRNA:   3'- ccCGCGUGGUCaGGGC-CGG---UCG-GUUG- -5'
11409 5' -62 NC_003085.1 + 11584 0.72 0.125631
Target:  5'- uGGUGCccACCAGcaccuccgacgUCUGGCCGGCCAGCg -3'
miRNA:   3'- cCCGCG--UGGUCa----------GGGCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 11779 0.66 0.340304
Target:  5'- cGGCgGCGCCGcGcUCCgGGCguGUCGGCu -3'
miRNA:   3'- cCCG-CGUGGU-C-AGGgCCGguCGGUUG- -5'
11409 5' -62 NC_003085.1 + 12056 0.66 0.356488
Target:  5'- uGGCGCAUCGGUcacuaccugcCCCGGCguGaCGAg -3'
miRNA:   3'- cCCGCGUGGUCA----------GGGCCGguCgGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.