miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 410 0.68 0.260936
Target:  5'- -uGCGCucccuggacGCCAGUCUCGGCCGcGUCuACg -3'
miRNA:   3'- ccCGCG---------UGGUCAGGGCCGGU-CGGuUG- -5'
11409 5' -62 NC_003085.1 + 44665 0.69 0.202489
Target:  5'- cGGGCuuuGgGCCcGUCCUGGCgGauGCCAGCa -3'
miRNA:   3'- -CCCG---CgUGGuCAGGGCCGgU--CGGUUG- -5'
11409 5' -62 NC_003085.1 + 31309 0.69 0.20993
Target:  5'- aGGCGCGCCcgacaccgaagccucAgcagacGUCCCaGGCCGGCCGu- -3'
miRNA:   3'- cCCGCGUGG---------------U------CAGGG-CCGGUCGGUug -5'
11409 5' -62 NC_003085.1 + 42309 0.69 0.21319
Target:  5'- aGGUGCagguGCCAGUCCUcacacaGGUC-GCCAGCa -3'
miRNA:   3'- cCCGCG----UGGUCAGGG------CCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 9382 0.69 0.21319
Target:  5'- aGGGCuGCuUgAGUaCCGGCCAGCgCGGCu -3'
miRNA:   3'- -CCCG-CGuGgUCAgGGCCGGUCG-GUUG- -5'
11409 5' -62 NC_003085.1 + 681 0.69 0.224374
Target:  5'- cGGC-CACCuGUCCCGcGuCCGGCCucggGCg -3'
miRNA:   3'- cCCGcGUGGuCAGGGC-C-GGUCGGu---UG- -5'
11409 5' -62 NC_003085.1 + 48688 0.69 0.230151
Target:  5'- uGGGCGCACCGuugCgCGGCgUGGCgGACu -3'
miRNA:   3'- -CCCGCGUGGUca-GgGCCG-GUCGgUUG- -5'
11409 5' -62 NC_003085.1 + 37406 0.68 0.234269
Target:  5'- gGGGCagguagugaccgauGCGCCAG-UgCGGCUAGCgAGCg -3'
miRNA:   3'- -CCCG--------------CGUGGUCaGgGCCGGUCGgUUG- -5'
11409 5' -62 NC_003085.1 + 18689 0.68 0.254522
Target:  5'- aGGGUGaCGCCGGUCagUGGCCcGCCc-- -3'
miRNA:   3'- -CCCGC-GUGGUCAGg-GCCGGuCGGuug -5'
11409 5' -62 NC_003085.1 + 24886 0.69 0.201966
Target:  5'- cGGCGC-CCAGUUCCagGGCCGccucaucGCCGAg -3'
miRNA:   3'- cCCGCGuGGUCAGGG--CCGGU-------CGGUUg -5'
11409 5' -62 NC_003085.1 + 29401 0.7 0.197314
Target:  5'- -uGCuGCGCCAG-CgCGGCCAGCCcauGGCg -3'
miRNA:   3'- ccCG-CGUGGUCaGgGCCGGUCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 29479 0.7 0.192256
Target:  5'- cGGGCGCguaCAGUCCUacugacuaccuuGGCgCGGCCAu- -3'
miRNA:   3'- -CCCGCGug-GUCAGGG------------CCG-GUCGGUug -5'
11409 5' -62 NC_003085.1 + 25276 0.77 0.053176
Target:  5'- cGGCGCGCCcGUCUaccucaccgcgaCGGCCGGCCAGg -3'
miRNA:   3'- cCCGCGUGGuCAGG------------GCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 31754 0.77 0.05626
Target:  5'- cGGGCGCACCuucGUCCCGGaaagUAGCguGCg -3'
miRNA:   3'- -CCCGCGUGGu--CAGGGCCg---GUCGguUG- -5'
11409 5' -62 NC_003085.1 + 34405 0.74 0.098247
Target:  5'- gGGGCggacgGCAUgGGgaUUCCGGCCAGCCAAa -3'
miRNA:   3'- -CCCG-----CGUGgUC--AGGGCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 44082 0.72 0.135869
Target:  5'- cGGUuCGCC-GUCCaucgccgCGGCCAGCCGACg -3'
miRNA:   3'- cCCGcGUGGuCAGG-------GCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 35892 0.71 0.147657
Target:  5'- cGGGcCGCGgagucCCAGggccaugCCaCGGCCAGCCcGCa -3'
miRNA:   3'- -CCC-GCGU-----GGUCa------GG-GCCGGUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 5370 0.71 0.151654
Target:  5'- cGGCGCGuCCGGUCCCgucaccgucgaGGCCuacgccGCCAAg -3'
miRNA:   3'- cCCGCGU-GGUCAGGG-----------CCGGu-----CGGUUg -5'
11409 5' -62 NC_003085.1 + 45818 0.7 0.187312
Target:  5'- -cGC-CACCAGugcagcgucccUCUCGGCCAGCCAGu -3'
miRNA:   3'- ccCGcGUGGUC-----------AGGGCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 29062 0.7 0.192256
Target:  5'- uGGC-CACCAG-CCUGaGCCAGCCu-- -3'
miRNA:   3'- cCCGcGUGGUCaGGGC-CGGUCGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.