miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 20620 0.66 0.324659
Target:  5'- cGGGCgGCGCgGGUgcuugcuucCCCauGGCCuacuccuugAGCCAGCg -3'
miRNA:   3'- -CCCG-CGUGgUCA---------GGG--CCGG---------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 18167 0.66 0.324659
Target:  5'- cGGGCGCGCCuG-CCCGcGCUuaCCGGa -3'
miRNA:   3'- -CCCGCGUGGuCaGGGC-CGGucGGUUg -5'
11409 5' -62 NC_003085.1 + 42899 0.66 0.323891
Target:  5'- gGGGCGCugucacggguuguGCCAGUCaaCUGcGCCAGuCCGu- -3'
miRNA:   3'- -CCCGCG-------------UGGUCAG--GGC-CGGUC-GGUug -5'
11409 5' -62 NC_003085.1 + 32049 0.66 0.316285
Target:  5'- aGGCgGCACauccuggccuGGUCCCGGCgGuacgcucGCCAACa -3'
miRNA:   3'- cCCG-CGUGg---------UCAGGGCCGgU-------CGGUUG- -5'
11409 5' -62 NC_003085.1 + 42351 0.67 0.309556
Target:  5'- cGGCGCgugACCGucUUCCGGCCGGCgAGg -3'
miRNA:   3'- cCCGCG---UGGUc-AGGGCCGGUCGgUUg -5'
11409 5' -62 NC_003085.1 + 34311 0.67 0.309556
Target:  5'- cGGGCaggGCACCGaggcGUCCa-GCuuCAGCCAGCa -3'
miRNA:   3'- -CCCG---CGUGGU----CAGGgcCG--GUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 11129 0.67 0.309556
Target:  5'- gGGGCGCGCgucgucUCUCGGaUguGCCGACa -3'
miRNA:   3'- -CCCGCGUGguc---AGGGCC-GguCGGUUG- -5'
11409 5' -62 NC_003085.1 + 48945 0.67 0.309556
Target:  5'- aGGGCaGCGCgCA--UCCGGuCCGGCCcGCg -3'
miRNA:   3'- -CCCG-CGUG-GUcaGGGCC-GGUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 44106 0.67 0.309556
Target:  5'- cGGaCGCGCCgAGUCCCuGGUCcuucuccgcGGCCAcGCg -3'
miRNA:   3'- cCC-GCGUGG-UCAGGG-CCGG---------UCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 19718 0.67 0.308815
Target:  5'- gGGGCGCgacggcgGCCAcGUCCUGGgCGacgacGCCGAg -3'
miRNA:   3'- -CCCGCG-------UGGU-CAGGGCCgGU-----CGGUUg -5'
11409 5' -62 NC_003085.1 + 29242 0.67 0.308815
Target:  5'- aGGGCagcgaggccuaccGCAacgcCCAGUCCgaauuCGGCCAGCagcgCAACg -3'
miRNA:   3'- -CCCG-------------CGU----GGUCAGG-----GCCGGUCG----GUUG- -5'
11409 5' -62 NC_003085.1 + 9170 0.67 0.302207
Target:  5'- aGGGCGaCGCUg--CCCaGGCCGGCgcaGACg -3'
miRNA:   3'- -CCCGC-GUGGucaGGG-CCGGUCGg--UUG- -5'
11409 5' -62 NC_003085.1 + 20106 0.67 0.294994
Target:  5'- cGGGCG-GCCAuGUCCUGGUugaagaCGGCCuGCc -3'
miRNA:   3'- -CCCGCgUGGU-CAGGGCCG------GUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 37069 0.67 0.294994
Target:  5'- cGGGUcgaGCAgCAGcaCCCGGCCcuuCCAGCg -3'
miRNA:   3'- -CCCG---CGUgGUCa-GGGCCGGuc-GGUUG- -5'
11409 5' -62 NC_003085.1 + 42458 0.67 0.294994
Target:  5'- aGGGCGCcggugaugGCagugaggAGUCCgaagCGGCCggAGCCAACg -3'
miRNA:   3'- -CCCGCG--------UGg------UCAGG----GCCGG--UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 16525 0.67 0.294994
Target:  5'- aGGCGCGCCuGUUgagCCGGUC-GCCGu- -3'
miRNA:   3'- cCCGCGUGGuCAG---GGCCGGuCGGUug -5'
11409 5' -62 NC_003085.1 + 10469 0.67 0.287915
Target:  5'- uGGCGC-CC---CUCGGCUGGCCGACc -3'
miRNA:   3'- cCCGCGuGGucaGGGCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 10641 0.67 0.287915
Target:  5'- gGGGCGCcggcagaggcaGCCaaAGUCCUcggGGCU-GCCGGCg -3'
miRNA:   3'- -CCCGCG-----------UGG--UCAGGG---CCGGuCGGUUG- -5'
11409 5' -62 NC_003085.1 + 37427 0.67 0.287915
Target:  5'- cGGCGCACgaAGUCgcgcagcaCCGGCaggugcGCCAGCg -3'
miRNA:   3'- cCCGCGUGg-UCAG--------GGCCGgu----CGGUUG- -5'
11409 5' -62 NC_003085.1 + 42841 0.67 0.287215
Target:  5'- cGGCGCGcgucuucgucuccCCAccUCCCGGCCcGGCCGGg -3'
miRNA:   3'- cCCGCGU-------------GGUc-AGGGCCGG-UCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.