Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11409 | 5' | -62 | NC_003085.1 | + | 34311 | 0.67 | 0.309556 |
Target: 5'- cGGGCaggGCACCGaggcGUCCa-GCuuCAGCCAGCa -3' miRNA: 3'- -CCCG---CGUGGU----CAGGgcCG--GUCGGUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 11129 | 0.67 | 0.309556 |
Target: 5'- gGGGCGCGCgucgucUCUCGGaUguGCCGACa -3' miRNA: 3'- -CCCGCGUGguc---AGGGCC-GguCGGUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 48945 | 0.67 | 0.309556 |
Target: 5'- aGGGCaGCGCgCA--UCCGGuCCGGCCcGCg -3' miRNA: 3'- -CCCG-CGUG-GUcaGGGCC-GGUCGGuUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 29242 | 0.67 | 0.308815 |
Target: 5'- aGGGCagcgaggccuaccGCAacgcCCAGUCCgaauuCGGCCAGCagcgCAACg -3' miRNA: 3'- -CCCG-------------CGU----GGUCAGG-----GCCGGUCG----GUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 45601 | 0.68 | 0.235457 |
Target: 5'- cGGGCGCGCCgucgacgcgccguGGUCCUGGaUgGGCaguGCg -3' miRNA: 3'- -CCCGCGUGG-------------UCAGGGCC-GgUCGgu-UG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 43902 | 0.68 | 0.242081 |
Target: 5'- uGGCGCACC-GUCgCGGCgccaGGCCcuuuGCg -3' miRNA: 3'- cCCGCGUGGuCAGgGCCGg---UCGGu---UG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 4098 | 0.68 | 0.254522 |
Target: 5'- uGGGUGgGCCgggcGGUCCaGGCU-GCCAGCc -3' miRNA: 3'- -CCCGCgUGG----UCAGGgCCGGuCGGUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 8623 | 0.68 | 0.266822 |
Target: 5'- aGGUugGCCAG-CCCGGCCgccgucagguacaGGCCGGCc -3' miRNA: 3'- cCCGcgUGGUCaGGGCCGG-------------UCGGUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 41725 | 0.68 | 0.270137 |
Target: 5'- cGGCcuccaacuucgGCACCgAGUuuuccugcucggacgCCCGGCCAGCCu-- -3' miRNA: 3'- cCCG-----------CGUGG-UCA---------------GGGCCGGUCGGuug -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 37406 | 0.68 | 0.234269 |
Target: 5'- gGGGCagguagugaccgauGCGCCAG-UgCGGCUAGCgAGCg -3' miRNA: 3'- -CCCG--------------CGUGGUCaGgGCCGGUCGgUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 18689 | 0.68 | 0.254522 |
Target: 5'- aGGGUGaCGCCGGUCagUGGCCcGCCc-- -3' miRNA: 3'- -CCCGC-GUGGUCAGg-GCCGGuCGGuug -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 410 | 0.68 | 0.260936 |
Target: 5'- -uGCGCucccuggacGCCAGUCUCGGCCGcGUCuACg -3' miRNA: 3'- ccCGCG---------UGGUCAGGGCCGGU-CGGuUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 39766 | 0.68 | 0.236053 |
Target: 5'- cGGCGCuCCAGUCUgcagggacGCCAGCCggUg -3' miRNA: 3'- cCCGCGuGGUCAGGgc------CGGUCGGuuG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 42309 | 0.69 | 0.21319 |
Target: 5'- aGGUGCagguGCCAGUCCUcacacaGGUC-GCCAGCa -3' miRNA: 3'- cCCGCG----UGGUCAGGG------CCGGuCGGUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 24886 | 0.69 | 0.201966 |
Target: 5'- cGGCGC-CCAGUUCCagGGCCGccucaucGCCGAg -3' miRNA: 3'- cCCGCGuGGUCAGGG--CCGGU-------CGGUUg -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 44665 | 0.69 | 0.202489 |
Target: 5'- cGGGCuuuGgGCCcGUCCUGGCgGauGCCAGCa -3' miRNA: 3'- -CCCG---CgUGGuCAGGGCCGgU--CGGUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 31309 | 0.69 | 0.20993 |
Target: 5'- aGGCGCGCCcgacaccgaagccucAgcagacGUCCCaGGCCGGCCGu- -3' miRNA: 3'- cCCGCGUGG---------------U------CAGGG-CCGGUCGGUug -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 9382 | 0.69 | 0.21319 |
Target: 5'- aGGGCuGCuUgAGUaCCGGCCAGCgCGGCu -3' miRNA: 3'- -CCCG-CGuGgUCAgGGCCGGUCG-GUUG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 681 | 0.69 | 0.224374 |
Target: 5'- cGGC-CACCuGUCCCGcGuCCGGCCucggGCg -3' miRNA: 3'- cCCGcGUGGuCAGGGC-C-GGUCGGu---UG- -5' |
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11409 | 5' | -62 | NC_003085.1 | + | 48688 | 0.69 | 0.230151 |
Target: 5'- uGGGCGCACCGuugCgCGGCgUGGCgGACu -3' miRNA: 3'- -CCCGCGUGGUca-GgGCCG-GUCGgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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