miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 40573 0.65 0.474477
Target:  5'- -gCCGCgGugGACCCcaagugcagcauuGCCGaCCGGGCGa -3'
miRNA:   3'- aaGGCG-UugUUGGGu------------CGGC-GGCCUGU- -5'
11410 5' -59 NC_003085.1 + 12979 0.66 0.468444
Target:  5'- -aCUGCGucCAACCCuaaAGCCGCCaGuGGCAc -3'
miRNA:   3'- aaGGCGUu-GUUGGG---UCGGCGG-C-CUGU- -5'
11410 5' -59 NC_003085.1 + 13737 0.66 0.467443
Target:  5'- gUCaCGCGaaGCcGCCCaacgggaGGCCGuuGGACGa -3'
miRNA:   3'- aAG-GCGU--UGuUGGG-------UCGGCggCCUGU- -5'
11410 5' -59 NC_003085.1 + 45045 0.66 0.472462
Target:  5'- -aCCGUcgGGCAccggaguagaugcgcGCCCAGCgUGCCGGAa- -3'
miRNA:   3'- aaGGCG--UUGU---------------UGGGUCG-GCGGCCUgu -5'
11410 5' -59 NC_003085.1 + 42182 0.66 0.468444
Target:  5'- -gUCGCAGcCAGCCuCGGCaugaggCGCUGGGCGa -3'
miRNA:   3'- aaGGCGUU-GUUGG-GUCG------GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 9872 0.66 0.458478
Target:  5'- cUCCGCGACGcGCuCCAGCuUGCCaGugGc -3'
miRNA:   3'- aAGGCGUUGU-UG-GGUCG-GCGGcCugU- -5'
11410 5' -59 NC_003085.1 + 715 0.66 0.458478
Target:  5'- cUCCGCGugGcGCCUgacgcGCCGCucaCGGACAg -3'
miRNA:   3'- aAGGCGUugU-UGGGu----CGGCG---GCCUGU- -5'
11410 5' -59 NC_003085.1 + 8625 0.66 0.458478
Target:  5'- gUUgGC--CAGCCCGGCCGCCGu-CAg -3'
miRNA:   3'- aAGgCGuuGUUGGGUCGGCGGCcuGU- -5'
11410 5' -59 NC_003085.1 + 26164 0.66 0.448626
Target:  5'- cUCCaGCGGCAcCCCauAGCCG-UGGACGa -3'
miRNA:   3'- aAGG-CGUUGUuGGG--UCGGCgGCCUGU- -5'
11410 5' -59 NC_003085.1 + 6708 0.66 0.458478
Target:  5'- -gCCGCccuGCAccgcACCCAuGCCGCCGauGACc -3'
miRNA:   3'- aaGGCGu--UGU----UGGGU-CGGCGGC--CUGu -5'
11410 5' -59 NC_003085.1 + 28358 0.66 0.438892
Target:  5'- aUCCGCGGCAccGCCguGgCG-CGGACc -3'
miRNA:   3'- aAGGCGUUGU--UGGguCgGCgGCCUGu -5'
11410 5' -59 NC_003085.1 + 31387 0.66 0.438892
Target:  5'- -gCCGCAAagAGgCCAGCCGCacguacucgaaGGACGg -3'
miRNA:   3'- aaGGCGUUg-UUgGGUCGGCGg----------CCUGU- -5'
11410 5' -59 NC_003085.1 + 3537 0.66 0.429281
Target:  5'- -cCCGUGGCGACuCUGGCUGCCucucuGGGCGc -3'
miRNA:   3'- aaGGCGUUGUUG-GGUCGGCGG-----CCUGU- -5'
11410 5' -59 NC_003085.1 + 8448 0.66 0.447647
Target:  5'- -gCCaGCGAC-GCCCAcggcgaugacgacGCCGCUGGGCc -3'
miRNA:   3'- aaGG-CGUUGuUGGGU-------------CGGCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 19130 0.66 0.458478
Target:  5'- -cCCGCGACAGCguccgCCAGggcCCGCUGGGu- -3'
miRNA:   3'- aaGGCGUUGUUG-----GGUC---GGCGGCCUgu -5'
11410 5' -59 NC_003085.1 + 22848 0.66 0.435996
Target:  5'- gUCCGCAgacgaggagGCGACggUCGaagaagagcgugucGCCGCCGGACu -3'
miRNA:   3'- aAGGCGU---------UGUUG--GGU--------------CGGCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 20450 0.66 0.419794
Target:  5'- gUCCGCcGC-GCgCgAGCCGCUGGAgAa -3'
miRNA:   3'- aAGGCGuUGuUG-GgUCGGCGGCCUgU- -5'
11410 5' -59 NC_003085.1 + 29257 0.66 0.458478
Target:  5'- -aCCGCAAC-GCCCAGuCCGaauuCGGcCAg -3'
miRNA:   3'- aaGGCGUUGuUGGGUC-GGCg---GCCuGU- -5'
11410 5' -59 NC_003085.1 + 31040 0.66 0.429281
Target:  5'- aUUCGCGAauGCCCAGaauGCCGGugGa -3'
miRNA:   3'- aAGGCGUUguUGGGUCgg-CGGCCugU- -5'
11410 5' -59 NC_003085.1 + 19836 0.66 0.432151
Target:  5'- -aCCGCAACAacggcgaACCgcugucgcacuacuuCGGCCuGCUGGACGg -3'
miRNA:   3'- aaGGCGUUGU-------UGG---------------GUCGG-CGGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.