miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 47558 1.05 0.000587
Target:  5'- cUUCCGCAACAACCCAGCCGCCGGACAc -3'
miRNA:   3'- -AAGGCGUUGUUGGGUCGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 10511 0.81 0.042191
Target:  5'- cUCCGUugagGACGACCCAGCCGCCagugaguccaccGGGCAa -3'
miRNA:   3'- aAGGCG----UUGUUGGGUCGGCGG------------CCUGU- -5'
11410 5' -59 NC_003085.1 + 46609 0.78 0.068883
Target:  5'- gUCgGCAugGcucagcccuccucGCCCGGCUGCCGGGCAg -3'
miRNA:   3'- aAGgCGUugU-------------UGGGUCGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 42708 0.75 0.105945
Target:  5'- gUCCGCcACGGCgCGGCagGCCGGGCAg -3'
miRNA:   3'- aAGGCGuUGUUGgGUCGg-CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 37228 0.74 0.125358
Target:  5'- gUUCCGCAugGGCCCAGCC-UUGGAg- -3'
miRNA:   3'- -AAGGCGUugUUGGGUCGGcGGCCUgu -5'
11410 5' -59 NC_003085.1 + 8413 0.74 0.140082
Target:  5'- gUCgCGUAGCAGCCCgccaAGCCGCCcaggaGGACGc -3'
miRNA:   3'- aAG-GCGUUGUUGGG----UCGGCGG-----CCUGU- -5'
11410 5' -59 NC_003085.1 + 40664 0.74 0.140082
Target:  5'- -gCCGC-GCAACCUcgcggAGCCGCCGGcGCAg -3'
miRNA:   3'- aaGGCGuUGUUGGG-----UCGGCGGCC-UGU- -5'
11410 5' -59 NC_003085.1 + 5800 0.73 0.152148
Target:  5'- cUCCGCuGCAACCCcGCCccCCGGGCu -3'
miRNA:   3'- aAGGCGuUGUUGGGuCGGc-GGCCUGu -5'
11410 5' -59 NC_003085.1 + 44510 0.73 0.160708
Target:  5'- cUUCUGCGcgguGguGCCCAGCaccCGCCGGACGa -3'
miRNA:   3'- -AAGGCGU----UguUGGGUCG---GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 10081 0.73 0.160708
Target:  5'- cUUCCGCAugAGCCC--CCGCCGG-CGu -3'
miRNA:   3'- -AAGGCGUugUUGGGucGGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 2823 0.72 0.184033
Target:  5'- aUCacugGCAACAcgucuGCCCGGCaGCCGGGCGa -3'
miRNA:   3'- aAGg---CGUUGU-----UGGGUCGgCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 37225 0.72 0.184033
Target:  5'- aUUCUG--GCGGCCCAGCCGCCGcGCu -3'
miRNA:   3'- -AAGGCguUGUUGGGUCGGCGGCcUGu -5'
11410 5' -59 NC_003085.1 + 15172 0.71 0.210299
Target:  5'- cUCUGCGcugACGGCCCGGCUgaGCCGGuGCGc -3'
miRNA:   3'- aAGGCGU---UGUUGGGUCGG--CGGCC-UGU- -5'
11410 5' -59 NC_003085.1 + 34263 0.71 0.22168
Target:  5'- cUUCCGCGGCGcggcgcuggcGCaCCGGCUcaGCCGGGCc -3'
miRNA:   3'- -AAGGCGUUGU----------UG-GGUCGG--CGGCCUGu -5'
11410 5' -59 NC_003085.1 + 48842 0.71 0.227565
Target:  5'- gUCCGCGcCAGCCUcgAGCgCGCCcaGGACGg -3'
miRNA:   3'- aAGGCGUuGUUGGG--UCG-GCGG--CCUGU- -5'
11410 5' -59 NC_003085.1 + 18742 0.71 0.229956
Target:  5'- cUgCGCAGCAugCCgaAGCCGCCgcuggagcgggcgauGGACAa -3'
miRNA:   3'- aAgGCGUUGUugGG--UCGGCGG---------------CCUGU- -5'
11410 5' -59 NC_003085.1 + 31791 0.7 0.246016
Target:  5'- ---gGCGaaGCGGCCCGGCCGCucgcgaCGGACAc -3'
miRNA:   3'- aaggCGU--UGUUGGGUCGGCG------GCCUGU- -5'
11410 5' -59 NC_003085.1 + 35096 0.7 0.246016
Target:  5'- aUCCGC-GCAG-CCAGCCGCUGG-Cu -3'
miRNA:   3'- aAGGCGuUGUUgGGUCGGCGGCCuGu -5'
11410 5' -59 NC_003085.1 + 28540 0.7 0.246016
Target:  5'- aUCCGCGGCGucgucGCCUAcGaCUGCUGGACGg -3'
miRNA:   3'- aAGGCGUUGU-----UGGGU-C-GGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 31592 0.7 0.246016
Target:  5'- aUCCGUuguuguGCAGCCCcaggaggcaccGGCCGCgGGGCc -3'
miRNA:   3'- aAGGCGu-----UGUUGGG-----------UCGGCGgCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.