Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11410 | 5' | -59 | NC_003085.1 | + | 323 | 0.67 | 0.383153 |
Target: 5'- -cCCGCGAagaagaAGCCC-GCCGCCaagaaGGGCGg -3' miRNA: 3'- aaGGCGUUg-----UUGGGuCGGCGG-----CCUGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 715 | 0.66 | 0.458478 |
Target: 5'- cUCCGCGugGcGCCUgacgcGCCGCucaCGGACAg -3' miRNA: 3'- aAGGCGUugU-UGGGu----CGGCG---GCCUGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 1323 | 0.68 | 0.324346 |
Target: 5'- -gCCGCGcuggaggagGCAGCCCAGaCUGCUGG-CGa -3' miRNA: 3'- aaGGCGU---------UGUUGGGUC-GGCGGCCuGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 1484 | 0.67 | 0.365646 |
Target: 5'- cUCCGCGacuugcucgacGCGGCCCGuccGgCGCuCGGGCAa -3' miRNA: 3'- aAGGCGU-----------UGUUGGGU---CgGCG-GCCUGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 2084 | 0.67 | 0.37433 |
Target: 5'- --aCGCGACGAgCgCAGCCGCCGcACc -3' miRNA: 3'- aagGCGUUGUUgG-GUCGGCGGCcUGu -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 2823 | 0.72 | 0.184033 |
Target: 5'- aUCacugGCAACAcgucuGCCCGGCaGCCGGGCGa -3' miRNA: 3'- aAGg---CGUUGU-----UGGGUCGgCGGCCUGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 3537 | 0.66 | 0.429281 |
Target: 5'- -cCCGUGGCGACuCUGGCUGCCucucuGGGCGc -3' miRNA: 3'- aaGGCGUUGUUG-GGUCGGCGG-----CCUGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 5800 | 0.73 | 0.152148 |
Target: 5'- cUCCGCuGCAACCCcGCCccCCGGGCu -3' miRNA: 3'- aAGGCGuUGUUGGGuCGGc-GGCCUGu -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 6708 | 0.66 | 0.458478 |
Target: 5'- -gCCGCccuGCAccgcACCCAuGCCGCCGauGACc -3' miRNA: 3'- aaGGCGu--UGU----UGGGU-CGGCGGC--CUGu -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 6961 | 0.68 | 0.327519 |
Target: 5'- cUUCgGCAGCGAugcccucuccguugcUCCGGCCGCuuCGGACu -3' miRNA: 3'- -AAGgCGUUGUU---------------GGGUCGGCG--GCCUGu -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 7206 | 0.69 | 0.286619 |
Target: 5'- aUCCGC----GCCCuGCCGCUGGAg- -3' miRNA: 3'- aAGGCGuuguUGGGuCGGCGGCCUgu -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 7610 | 0.68 | 0.340439 |
Target: 5'- -aCCGCGAgGuggaCCAG-CGCCGGGCGg -3' miRNA: 3'- aaGGCGUUgUug--GGUCgGCGGCCUGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 8413 | 0.74 | 0.140082 |
Target: 5'- gUCgCGUAGCAGCCCgccaAGCCGCCcaggaGGACGc -3' miRNA: 3'- aAG-GCGUUGUUGGG----UCGGCGG-----CCUGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 8448 | 0.66 | 0.447647 |
Target: 5'- -gCCaGCGAC-GCCCAcggcgaugacgacGCCGCUGGGCc -3' miRNA: 3'- aaGG-CGUUGuUGGGU-------------CGGCGGCCUGu -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 8570 | 0.67 | 0.37433 |
Target: 5'- -gCCGCAACAACCguggCAuGCCGCCGu--- -3' miRNA: 3'- aaGGCGUUGUUGG----GU-CGGCGGCcugu -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 8625 | 0.66 | 0.458478 |
Target: 5'- gUUgGC--CAGCCCGGCCGCCGu-CAg -3' miRNA: 3'- aAGgCGuuGUUGGGUCGGCGGCcuGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 9872 | 0.66 | 0.458478 |
Target: 5'- cUCCGCGACGcGCuCCAGCuUGCCaGugGc -3' miRNA: 3'- aAGGCGUUGU-UG-GGUCG-GCGGcCugU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 10081 | 0.73 | 0.160708 |
Target: 5'- cUUCCGCAugAGCCC--CCGCCGG-CGu -3' miRNA: 3'- -AAGGCGUugUUGGGucGGCGGCCuGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 10511 | 0.81 | 0.042191 |
Target: 5'- cUCCGUugagGACGACCCAGCCGCCagugaguccaccGGGCAa -3' miRNA: 3'- aAGGCG----UUGUUGGGUCGGCGG------------CCUGU- -5' |
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11410 | 5' | -59 | NC_003085.1 | + | 12238 | 0.68 | 0.3487 |
Target: 5'- --gCGCGGCGGCUgGGCCGCCaGAa- -3' miRNA: 3'- aagGCGUUGUUGGgUCGGCGGcCUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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