miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 323 0.67 0.383153
Target:  5'- -cCCGCGAagaagaAGCCC-GCCGCCaagaaGGGCGg -3'
miRNA:   3'- aaGGCGUUg-----UUGGGuCGGCGG-----CCUGU- -5'
11410 5' -59 NC_003085.1 + 715 0.66 0.458478
Target:  5'- cUCCGCGugGcGCCUgacgcGCCGCucaCGGACAg -3'
miRNA:   3'- aAGGCGUugU-UGGGu----CGGCG---GCCUGU- -5'
11410 5' -59 NC_003085.1 + 1323 0.68 0.324346
Target:  5'- -gCCGCGcuggaggagGCAGCCCAGaCUGCUGG-CGa -3'
miRNA:   3'- aaGGCGU---------UGUUGGGUC-GGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 1484 0.67 0.365646
Target:  5'- cUCCGCGacuugcucgacGCGGCCCGuccGgCGCuCGGGCAa -3'
miRNA:   3'- aAGGCGU-----------UGUUGGGU---CgGCG-GCCUGU- -5'
11410 5' -59 NC_003085.1 + 2084 0.67 0.37433
Target:  5'- --aCGCGACGAgCgCAGCCGCCGcACc -3'
miRNA:   3'- aagGCGUUGUUgG-GUCGGCGGCcUGu -5'
11410 5' -59 NC_003085.1 + 2823 0.72 0.184033
Target:  5'- aUCacugGCAACAcgucuGCCCGGCaGCCGGGCGa -3'
miRNA:   3'- aAGg---CGUUGU-----UGGGUCGgCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 3537 0.66 0.429281
Target:  5'- -cCCGUGGCGACuCUGGCUGCCucucuGGGCGc -3'
miRNA:   3'- aaGGCGUUGUUG-GGUCGGCGG-----CCUGU- -5'
11410 5' -59 NC_003085.1 + 5800 0.73 0.152148
Target:  5'- cUCCGCuGCAACCCcGCCccCCGGGCu -3'
miRNA:   3'- aAGGCGuUGUUGGGuCGGc-GGCCUGu -5'
11410 5' -59 NC_003085.1 + 6708 0.66 0.458478
Target:  5'- -gCCGCccuGCAccgcACCCAuGCCGCCGauGACc -3'
miRNA:   3'- aaGGCGu--UGU----UGGGU-CGGCGGC--CUGu -5'
11410 5' -59 NC_003085.1 + 6961 0.68 0.327519
Target:  5'- cUUCgGCAGCGAugcccucuccguugcUCCGGCCGCuuCGGACu -3'
miRNA:   3'- -AAGgCGUUGUU---------------GGGUCGGCG--GCCUGu -5'
11410 5' -59 NC_003085.1 + 7206 0.69 0.286619
Target:  5'- aUCCGC----GCCCuGCCGCUGGAg- -3'
miRNA:   3'- aAGGCGuuguUGGGuCGGCGGCCUgu -5'
11410 5' -59 NC_003085.1 + 7610 0.68 0.340439
Target:  5'- -aCCGCGAgGuggaCCAG-CGCCGGGCGg -3'
miRNA:   3'- aaGGCGUUgUug--GGUCgGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 8413 0.74 0.140082
Target:  5'- gUCgCGUAGCAGCCCgccaAGCCGCCcaggaGGACGc -3'
miRNA:   3'- aAG-GCGUUGUUGGG----UCGGCGG-----CCUGU- -5'
11410 5' -59 NC_003085.1 + 8448 0.66 0.447647
Target:  5'- -gCCaGCGAC-GCCCAcggcgaugacgacGCCGCUGGGCc -3'
miRNA:   3'- aaGG-CGUUGuUGGGU-------------CGGCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 8570 0.67 0.37433
Target:  5'- -gCCGCAACAACCguggCAuGCCGCCGu--- -3'
miRNA:   3'- aaGGCGUUGUUGG----GU-CGGCGGCcugu -5'
11410 5' -59 NC_003085.1 + 8625 0.66 0.458478
Target:  5'- gUUgGC--CAGCCCGGCCGCCGu-CAg -3'
miRNA:   3'- aAGgCGuuGUUGGGUCGGCGGCcuGU- -5'
11410 5' -59 NC_003085.1 + 9872 0.66 0.458478
Target:  5'- cUCCGCGACGcGCuCCAGCuUGCCaGugGc -3'
miRNA:   3'- aAGGCGUUGU-UG-GGUCG-GCGGcCugU- -5'
11410 5' -59 NC_003085.1 + 10081 0.73 0.160708
Target:  5'- cUUCCGCAugAGCCC--CCGCCGG-CGu -3'
miRNA:   3'- -AAGGCGUugUUGGGucGGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 10511 0.81 0.042191
Target:  5'- cUCCGUugagGACGACCCAGCCGCCagugaguccaccGGGCAa -3'
miRNA:   3'- aAGGCG----UUGUUGGGUCGGCGG------------CCUGU- -5'
11410 5' -59 NC_003085.1 + 12238 0.68 0.3487
Target:  5'- --gCGCGGCGGCUgGGCCGCCaGAa- -3'
miRNA:   3'- aagGCGUUGUUGGgUCGGCGGcCUgu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.