miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 2084 0.67 0.37433
Target:  5'- --aCGCGACGAgCgCAGCCGCCGcACc -3'
miRNA:   3'- aagGCGUUGUUgG-GUCGGCGGCcUGu -5'
11410 5' -59 NC_003085.1 + 25295 0.69 0.308826
Target:  5'- -aCCGCGACGG-CCGGCCaGgUGGACGa -3'
miRNA:   3'- aaGGCGUUGUUgGGUCGG-CgGCCUGU- -5'
11410 5' -59 NC_003085.1 + 6961 0.68 0.327519
Target:  5'- cUUCgGCAGCGAugcccucuccguugcUCCGGCCGCuuCGGACu -3'
miRNA:   3'- -AAGgCGUUGUU---------------GGGUCGGCG--GCCUGu -5'
11410 5' -59 NC_003085.1 + 19055 0.68 0.340439
Target:  5'- aUUCCGCGGC-GCgCGGCggagcaggCGCCGGGCc -3'
miRNA:   3'- -AAGGCGUUGuUGgGUCG--------GCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 25869 0.68 0.3487
Target:  5'- -aCCGUcgAGCAACUCGccGCCguGCCGGACGc -3'
miRNA:   3'- aaGGCG--UUGUUGGGU--CGG--CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 24360 0.67 0.365646
Target:  5'- --aCGgGACGGCCUuuGGCgGCCGGGCc -3'
miRNA:   3'- aagGCgUUGUUGGG--UCGgCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 14298 0.67 0.37433
Target:  5'- -gCCGC-GCAGCCCucaguaagAGUCGCCaGACGg -3'
miRNA:   3'- aaGGCGuUGUUGGG--------UCGGCGGcCUGU- -5'
11410 5' -59 NC_003085.1 + 8570 0.67 0.37433
Target:  5'- -gCCGCAACAACCguggCAuGCCGCCGu--- -3'
miRNA:   3'- aaGGCGUUGUUGG----GU-CGGCGGCcugu -5'
11410 5' -59 NC_003085.1 + 22111 0.67 0.37433
Target:  5'- -gCCGCccAGCAgaGCCCGGCgccgcagcaGCCGGACc -3'
miRNA:   3'- aaGGCG--UUGU--UGGGUCGg--------CGGCCUGu -5'
11410 5' -59 NC_003085.1 + 22940 0.7 0.258994
Target:  5'- -gCCGCGucgACGGCgCGGCgaaGCCGGACGa -3'
miRNA:   3'- aaGGCGU---UGUUGgGUCGg--CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 36006 0.7 0.258332
Target:  5'- cUCCGCGACAGCUUggcggauGGCgGCCauGGGCAc -3'
miRNA:   3'- aAGGCGUUGUUGGG-------UCGgCGG--CCUGU- -5'
11410 5' -59 NC_003085.1 + 31592 0.7 0.246016
Target:  5'- aUCCGUuguuguGCAGCCCcaggaggcaccGGCCGCgGGGCc -3'
miRNA:   3'- aAGGCGu-----UGUUGGG-----------UCGGCGgCCUGu -5'
11410 5' -59 NC_003085.1 + 40664 0.74 0.140082
Target:  5'- -gCCGC-GCAACCUcgcggAGCCGCCGGcGCAg -3'
miRNA:   3'- aaGGCGuUGUUGGG-----UCGGCGGCC-UGU- -5'
11410 5' -59 NC_003085.1 + 10081 0.73 0.160708
Target:  5'- cUUCCGCAugAGCCC--CCGCCGG-CGu -3'
miRNA:   3'- -AAGGCGUugUUGGGucGGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 37225 0.72 0.184033
Target:  5'- aUUCUG--GCGGCCCAGCCGCCGcGCu -3'
miRNA:   3'- -AAGGCguUGUUGGGUCGGCGGCcUGu -5'
11410 5' -59 NC_003085.1 + 15172 0.71 0.210299
Target:  5'- cUCUGCGcugACGGCCCGGCUgaGCCGGuGCGc -3'
miRNA:   3'- aAGGCGU---UGUUGGGUCGG--CGGCC-UGU- -5'
11410 5' -59 NC_003085.1 + 18742 0.71 0.229956
Target:  5'- cUgCGCAGCAugCCgaAGCCGCCgcuggagcgggcgauGGACAa -3'
miRNA:   3'- aAgGCGUUGUugGG--UCGGCGG---------------CCUGU- -5'
11410 5' -59 NC_003085.1 + 31791 0.7 0.246016
Target:  5'- ---gGCGaaGCGGCCCGGCCGCucgcgaCGGACAc -3'
miRNA:   3'- aaggCGU--UGUUGGGUCGGCG------GCCUGU- -5'
11410 5' -59 NC_003085.1 + 35096 0.7 0.246016
Target:  5'- aUCCGC-GCAG-CCAGCCGCUGG-Cu -3'
miRNA:   3'- aAGGCGuUGUUgGGUCGGCGGCCuGu -5'
11410 5' -59 NC_003085.1 + 28540 0.7 0.246016
Target:  5'- aUCCGCGGCGucgucGCCUAcGaCUGCUGGACGg -3'
miRNA:   3'- aAGGCGUUGU-----UGGGU-C-GGCGGCCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.