miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 44131 0.66 0.419794
Target:  5'- cUCCGCGGCcacgcgcuuCUCGGUCGCCuucaGGACGg -3'
miRNA:   3'- aAGGCGUUGuu-------GGGUCGGCGG----CCUGU- -5'
11410 5' -59 NC_003085.1 + 35194 0.67 0.410435
Target:  5'- -aCgGCAGCAGCCUGGCCGCaCGu--- -3'
miRNA:   3'- aaGgCGUUGUUGGGUCGGCG-GCcugu -5'
11410 5' -59 NC_003085.1 + 14498 0.67 0.410435
Target:  5'- aUCCGCAagaaguACAACCUcaaGGCCGagaggGGACAc -3'
miRNA:   3'- aAGGCGU------UGUUGGG---UCGGCgg---CCUGU- -5'
11410 5' -59 NC_003085.1 + 24298 0.67 0.401207
Target:  5'- -aCCGCcACcaGGCCaCGGUCGCCGGcCAc -3'
miRNA:   3'- aaGGCGuUG--UUGG-GUCGGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 45888 0.67 0.392112
Target:  5'- cUCgGCAGCGaggcgcgcuugcGCCCGGCCGCCu---- -3'
miRNA:   3'- aAGgCGUUGU------------UGGGUCGGCGGccugu -5'
11410 5' -59 NC_003085.1 + 31450 0.67 0.392112
Target:  5'- -aUgGCAcguACGGCCuCGcGCCGUCGGACAg -3'
miRNA:   3'- aaGgCGU---UGUUGG-GU-CGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 43713 0.67 0.392112
Target:  5'- gUCCGuCAAUGGCCCAaucgaCGCgGGACAc -3'
miRNA:   3'- aAGGC-GUUGUUGGGUcg---GCGgCCUGU- -5'
11410 5' -59 NC_003085.1 + 20351 0.67 0.392112
Target:  5'- gUUCCGCGccGCGucGCCgCuGCugaCGCCGGGCAa -3'
miRNA:   3'- -AAGGCGU--UGU--UGG-GuCG---GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 28615 0.67 0.383153
Target:  5'- -aCCGCAGCGgcgaGCUCGG-CGCCGGuCGc -3'
miRNA:   3'- aaGGCGUUGU----UGGGUCgGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 323 0.67 0.383153
Target:  5'- -cCCGCGAagaagaAGCCC-GCCGCCaagaaGGGCGg -3'
miRNA:   3'- aaGGCGUUg-----UUGGGuCGGCGG-----CCUGU- -5'
11410 5' -59 NC_003085.1 + 25006 0.67 0.383153
Target:  5'- gUCCGCGguGCAGaaggcGCCGCUGGGCAc -3'
miRNA:   3'- aAGGCGU--UGUUgggu-CGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 2084 0.67 0.37433
Target:  5'- --aCGCGACGAgCgCAGCCGCCGcACc -3'
miRNA:   3'- aagGCGUUGUUgG-GUCGGCGGCcUGu -5'
11410 5' -59 NC_003085.1 + 14298 0.67 0.37433
Target:  5'- -gCCGC-GCAGCCCucaguaagAGUCGCCaGACGg -3'
miRNA:   3'- aaGGCGuUGUUGGG--------UCGGCGGcCUGU- -5'
11410 5' -59 NC_003085.1 + 14162 0.67 0.37433
Target:  5'- -gCCGCcGCGACCU-GCUGCCGaGCAa -3'
miRNA:   3'- aaGGCGuUGUUGGGuCGGCGGCcUGU- -5'
11410 5' -59 NC_003085.1 + 22111 0.67 0.37433
Target:  5'- -gCCGCccAGCAgaGCCCGGCgccgcagcaGCCGGACc -3'
miRNA:   3'- aaGGCG--UUGU--UGGGUCGg--------CGGCCUGu -5'
11410 5' -59 NC_003085.1 + 8570 0.67 0.37433
Target:  5'- -gCCGCAACAACCguggCAuGCCGCCGu--- -3'
miRNA:   3'- aaGGCGUUGUUGG----GU-CGGCGGCcugu -5'
11410 5' -59 NC_003085.1 + 24033 0.67 0.373455
Target:  5'- -gCCGCucaguGCuGCUCAGCCguugccguugaggGCCGGACGc -3'
miRNA:   3'- aaGGCGu----UGuUGGGUCGG-------------CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 24360 0.67 0.365646
Target:  5'- --aCGgGACGGCCUuuGGCgGCCGGGCc -3'
miRNA:   3'- aagGCgUUGUUGGG--UCGgCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 1484 0.67 0.365646
Target:  5'- cUCCGCGacuugcucgacGCGGCCCGuccGgCGCuCGGGCAa -3'
miRNA:   3'- aAGGCGU-----------UGUUGGGU---CgGCG-GCCUGU- -5'
11410 5' -59 NC_003085.1 + 27525 0.68 0.357103
Target:  5'- -cCUGCAugAAgCUGGCgaUGCCGGACAg -3'
miRNA:   3'- aaGGCGUugUUgGGUCG--GCGGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.