miRNA display CGI


Results 61 - 76 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 7642 0.66 0.49609
Target:  5'- -gGGAGCGCaucaacgGCGCcGAguccugGGCCACGa -3'
miRNA:   3'- gaCUUCGCGg------CGCGaCUa-----CCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 8818 0.66 0.49609
Target:  5'- aCUGAGGCuGCCGaGac-AUGGCUGCGCg -3'
miRNA:   3'- -GACUUCG-CGGCgCgacUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 4212 0.66 0.495055
Target:  5'- gCUGAcGCGCgGCggguuacGCUGAgcgucagccgGGCCGCAg -3'
miRNA:   3'- -GACUuCGCGgCG-------CGACUa---------CCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 16156 0.66 0.475583
Target:  5'- cCUGAA-UGaCCGUGacgccgUGGUGGCCGCGCu -3'
miRNA:   3'- -GACUUcGC-GGCGCg-----ACUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 9973 0.66 0.475583
Target:  5'- -aGAAGCgGCCagcuucCGCUGAcGGCCuACGCc -3'
miRNA:   3'- gaCUUCG-CGGc-----GCGACUaCCGG-UGUG- -5'
11411 3' -58.1 NC_003085.1 + 23306 0.67 0.455507
Target:  5'- aUGggGUGCCGCuGgaGAUG-CUugACg -3'
miRNA:   3'- gACuuCGCGGCG-CgaCUACcGGugUG- -5'
11411 3' -58.1 NC_003085.1 + 932 0.67 0.455507
Target:  5'- cCUGGAGCgucgGCCGCGUccgGGUG-CCAgACa -3'
miRNA:   3'- -GACUUCG----CGGCGCGa--CUACcGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 3674 0.66 0.465489
Target:  5'- -cGAGGUugaccucgaGuuGCGUUGGgaugcGGCCACGCa -3'
miRNA:   3'- gaCUUCG---------CggCGCGACUa----CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 18832 0.67 0.454515
Target:  5'- cCUGAGGaguacuaCGCCGCGCUGAaguucguguucGGCCAg-- -3'
miRNA:   3'- -GACUUC-------GCGGCGCGACUa----------CCGGUgug -5'
11411 3' -58.1 NC_003085.1 + 17139 0.67 0.445642
Target:  5'- aCUGGacGGCGUcugcuacuggCGCGCUGAggcggacgUGGCC-CACc -3'
miRNA:   3'- -GACU--UCGCG----------GCGCGACU--------ACCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 38068 0.67 0.435897
Target:  5'- gUGguGCGUCGCGgaGAcGGCaGCGCa -3'
miRNA:   3'- gACuuCGCGGCGCgaCUaCCGgUGUG- -5'
11411 3' -58.1 NC_003085.1 + 18104 0.67 0.425322
Target:  5'- -gGAAGCgGCUGCGCaUGgcGGCCuaccgguacguccGCGCg -3'
miRNA:   3'- gaCUUCG-CGGCGCG-ACuaCCGG-------------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 25221 0.67 0.40742
Target:  5'- gCUGGuaccucaucaccGGCGCCGCcCUGGUGcGCUcCGCg -3'
miRNA:   3'- -GACU------------UCGCGGCGcGACUAC-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 12818 0.67 0.406492
Target:  5'- cCUGAcgguccgGGCGgaUGCGCUGuUGGCCGC-Ca -3'
miRNA:   3'- -GACU-------UCGCg-GCGCGACuACCGGUGuG- -5'
11411 3' -58.1 NC_003085.1 + 13098 0.68 0.389095
Target:  5'- aCUGGcaCGCCGCGCUGA-GGUgcgugaGCGCg -3'
miRNA:   3'- -GACUucGCGGCGCGACUaCCGg-----UGUG- -5'
11411 3' -58.1 NC_003085.1 + 17967 0.76 0.11029
Target:  5'- cCUGAAGCGCCggcaGCGCg---GGCCGCAg -3'
miRNA:   3'- -GACUUCGCGG----CGCGacuaCCGGUGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.