miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 563 0.68 0.380138
Target:  5'- -cGAGGCGgCGCgGCUGGcgGGCCAaUGCu -3'
miRNA:   3'- gaCUUCGCgGCG-CGACUa-CCGGU-GUG- -5'
11411 3' -58.1 NC_003085.1 + 932 0.67 0.455507
Target:  5'- cCUGGAGCgucgGCCGCGUccgGGUG-CCAgACa -3'
miRNA:   3'- -GACUUCG----CGGCGCGa--CUACcGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 1553 0.66 0.506493
Target:  5'- aCUGAGuGCGagaCGaCGCUGAcacUGGCCAgAg -3'
miRNA:   3'- -GACUU-CGCg--GC-GCGACU---ACCGGUgUg -5'
11411 3' -58.1 NC_003085.1 + 2359 0.66 0.506493
Target:  5'- -gGAGGCGCaGUGC-GA-GGCCGCGg -3'
miRNA:   3'- gaCUUCGCGgCGCGaCUaCCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 3618 0.73 0.181653
Target:  5'- cCUGGAcguGCGCCGCGaCUGGcUGGCCgagagggacgcuGCACu -3'
miRNA:   3'- -GACUU---CGCGGCGC-GACU-ACCGG------------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 3674 0.66 0.465489
Target:  5'- -cGAGGUugaccucgaGuuGCGUUGGgaugcGGCCACGCa -3'
miRNA:   3'- gaCUUCG---------CggCGCGACUa----CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 4109 0.71 0.256228
Target:  5'- gCUGGaguugGGCGCCGCGCUGGgacuccaGcGCCGCu- -3'
miRNA:   3'- -GACU-----UCGCGGCGCGACUa------C-CGGUGug -5'
11411 3' -58.1 NC_003085.1 + 4212 0.66 0.495055
Target:  5'- gCUGAcGCGCgGCggguuacGCUGAgcgucagccgGGCCGCAg -3'
miRNA:   3'- -GACUuCGCGgCG-------CGACUa---------CCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 5302 0.69 0.329356
Target:  5'- -cGAAGuCGCCucccuccgcgaGCGC--GUGGCCACGCu -3'
miRNA:   3'- gaCUUC-GCGG-----------CGCGacUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 5564 0.68 0.380138
Target:  5'- ---uGGCGCCGCGaacGGUGcGCCACGu -3'
miRNA:   3'- gacuUCGCGGCGCga-CUAC-CGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 5664 0.69 0.337461
Target:  5'- --cGAGCGCCGCGgaGAgauuccGGCCAUuCg -3'
miRNA:   3'- gacUUCGCGGCGCgaCUa-----CCGGUGuG- -5'
11411 3' -58.1 NC_003085.1 + 6933 0.69 0.329356
Target:  5'- -cGAGGCGaaGCGg-GA-GGCCACGCa -3'
miRNA:   3'- gaCUUCGCggCGCgaCUaCCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 7503 0.67 0.455507
Target:  5'- -gGAAGCGCagGUGCgucucGGUGGCgGCAa -3'
miRNA:   3'- gaCUUCGCGg-CGCGa----CUACCGgUGUg -5'
11411 3' -58.1 NC_003085.1 + 7575 0.72 0.196948
Target:  5'- gCUGGAGuCGCUGCGUcag-GGCUACACg -3'
miRNA:   3'- -GACUUC-GCGGCGCGacuaCCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 7642 0.66 0.49609
Target:  5'- -gGGAGCGCaucaacgGCGCcGAguccugGGCCACGa -3'
miRNA:   3'- gaCUUCGCGg------CGCGaCUa-----CCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 8187 0.66 0.475583
Target:  5'- gCUG-GGCGCUGUGC--AUGGCC-CGCc -3'
miRNA:   3'- -GACuUCGCGGCGCGacUACCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 8218 0.69 0.329356
Target:  5'- cCUGccGCGCgugGCGUUGuagaGGCCGCACg -3'
miRNA:   3'- -GACuuCGCGg--CGCGACua--CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 8341 0.72 0.213356
Target:  5'- -cGggGUGCCGCGCUcGGccugGGCCucCACc -3'
miRNA:   3'- gaCuuCGCGGCGCGA-CUa---CCGGu-GUG- -5'
11411 3' -58.1 NC_003085.1 + 8818 0.66 0.49609
Target:  5'- aCUGAGGCuGCCGaGac-AUGGCUGCGCg -3'
miRNA:   3'- -GACUUCG-CGGCgCgacUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 8936 0.68 0.383704
Target:  5'- -cGAAGUGCagcgcguggccaaccUGCGCUGGgccaagGGCCGCGg -3'
miRNA:   3'- gaCUUCGCG---------------GCGCGACUa-----CCGGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.