miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 3674 0.66 0.465489
Target:  5'- -cGAGGUugaccucgaGuuGCGUUGGgaugcGGCCACGCa -3'
miRNA:   3'- gaCUUCG---------CggCGCGACUa----CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 16833 0.67 0.455507
Target:  5'- cCUGGAG-GCUGCGCuUGAuguccucaaucUGGCUcaGCGCg -3'
miRNA:   3'- -GACUUCgCGGCGCG-ACU-----------ACCGG--UGUG- -5'
11411 3' -58.1 NC_003085.1 + 21667 0.67 0.455507
Target:  5'- -gGGAGCGaCGCGCgGGUGaGCaucaGCGCg -3'
miRNA:   3'- gaCUUCGCgGCGCGaCUAC-CGg---UGUG- -5'
11411 3' -58.1 NC_003085.1 + 25772 0.67 0.455507
Target:  5'- -gGAGGCuGCUGCGCg---GGCC-CGCu -3'
miRNA:   3'- gaCUUCG-CGGCGCGacuaCCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 44283 0.67 0.455507
Target:  5'- ---cGGCGCCGCccugccuuccGCgccagGAUGGCCGCu- -3'
miRNA:   3'- gacuUCGCGGCG----------CGa----CUACCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 7503 0.67 0.455507
Target:  5'- -gGAAGCGCagGUGCgucucGGUGGCgGCAa -3'
miRNA:   3'- gaCUUCGCGg-CGCGa----CUACCGgUGUg -5'
11411 3' -58.1 NC_003085.1 + 23306 0.67 0.455507
Target:  5'- aUGggGUGCCGCuGgaGAUG-CUugACg -3'
miRNA:   3'- gACuuCGCGGCG-CgaCUACcGGugUG- -5'
11411 3' -58.1 NC_003085.1 + 932 0.67 0.455507
Target:  5'- cCUGGAGCgucgGCCGCGUccgGGUG-CCAgACa -3'
miRNA:   3'- -GACUUCG----CGGCGCGa--CUACcGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 18832 0.67 0.454515
Target:  5'- cCUGAGGaguacuaCGCCGCGCUGAaguucguguucGGCCAg-- -3'
miRNA:   3'- -GACUUC-------GCGGCGCGACUa----------CCGGUgug -5'
11411 3' -58.1 NC_003085.1 + 45225 0.67 0.454515
Target:  5'- -cGAAGCGCUGCggcccgGCUGAcGcucagcguaacccGCCGCGCg -3'
miRNA:   3'- gaCUUCGCGGCG------CGACUaC-------------CGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 21925 0.67 0.445642
Target:  5'- -----cCGCCGcCGgaGAUGGCCACGa -3'
miRNA:   3'- gacuucGCGGC-GCgaCUACCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 17139 0.67 0.445642
Target:  5'- aCUGGacGGCGUcugcuacuggCGCGCUGAggcggacgUGGCC-CACc -3'
miRNA:   3'- -GACU--UCGCG----------GCGCGACU--------ACCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 38068 0.67 0.435897
Target:  5'- gUGguGCGUCGCGgaGAcGGCaGCGCa -3'
miRNA:   3'- gACuuCGCGGCGCgaCUaCCGgUGUG- -5'
11411 3' -58.1 NC_003085.1 + 40502 0.67 0.426277
Target:  5'- -cGAGGCcgcggcccuugGCCcaGCGCaGGuUGGCCACGCg -3'
miRNA:   3'- gaCUUCG-----------CGG--CGCGaCU-ACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 18104 0.67 0.425322
Target:  5'- -gGAAGCgGCUGCGCaUGgcGGCCuaccgguacguccGCGCg -3'
miRNA:   3'- gaCUUCG-CGGCGCG-ACuaCCGG-------------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 47168 0.67 0.416784
Target:  5'- -aGGccAGCGCCGUGCUGccgGaGCC-CGCg -3'
miRNA:   3'- gaCU--UCGCGGCGCGACua-C-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 25221 0.67 0.40742
Target:  5'- gCUGGuaccucaucaccGGCGCCGCcCUGGUGcGCUcCGCg -3'
miRNA:   3'- -GACU------------UCGCGGCGcGACUAC-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 12818 0.67 0.406492
Target:  5'- cCUGAcgguccgGGCGgaUGCGCUGuUGGCCGC-Ca -3'
miRNA:   3'- -GACU-------UCGCg-GCGCGACuACCGGUGuG- -5'
11411 3' -58.1 NC_003085.1 + 41322 0.68 0.39819
Target:  5'- cCUGAuGCGCgGCGCuUGAgcaGGuCCACcACg -3'
miRNA:   3'- -GACUuCGCGgCGCG-ACUa--CC-GGUG-UG- -5'
11411 3' -58.1 NC_003085.1 + 13098 0.68 0.389095
Target:  5'- aCUGGcaCGCCGCGCUGA-GGUgcgugaGCGCg -3'
miRNA:   3'- -GACUucGCGGCGCGACUaCCGg-----UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.