miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 5' -54.6 NC_003085.1 + 47013 1.13 0.000491
Target:  5'- gUGGCUGACGCAUAGUCAAGGCGCUCCa -3'
miRNA:   3'- -ACCGACUGCGUAUCAGUUCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 632 0.89 0.024814
Target:  5'- aGGCUGGCGCGgaccucGUCGAGGCGCUCg -3'
miRNA:   3'- aCCGACUGCGUau----CAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 18970 0.76 0.219269
Target:  5'- cUGGCUGuCGUcgAGUCcAGGCGUcgcgUCCa -3'
miRNA:   3'- -ACCGACuGCGuaUCAGuUCCGCG----AGG- -5'
11411 5' -54.6 NC_003085.1 + 38248 0.73 0.300173
Target:  5'- gGGCUGACGguUGcacGUCAuGGCGUgCCu -3'
miRNA:   3'- aCCGACUGCguAU---CAGUuCCGCGaGG- -5'
11411 5' -54.6 NC_003085.1 + 12021 0.73 0.31571
Target:  5'- gUGGCgGGCGCGgGGUU--GGCGCUCg -3'
miRNA:   3'- -ACCGaCUGCGUaUCAGuuCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 38147 0.72 0.340138
Target:  5'- -uGCUGGCGU-UGGUgGuGGCGCUCCc -3'
miRNA:   3'- acCGACUGCGuAUCAgUuCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 23408 0.72 0.365906
Target:  5'- aGGCUGA-GCAgcgAGUCAugcaGCGCUUCg -3'
miRNA:   3'- aCCGACUgCGUa--UCAGUuc--CGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 28439 0.71 0.38747
Target:  5'- aGGCUGgacauaccgccgccaGgGCGUGGaUUGAGGCGCUCa -3'
miRNA:   3'- aCCGAC---------------UgCGUAUC-AGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 46643 0.71 0.39299
Target:  5'- gGGCaGACGUGUugccAGUgaugcCGAGGCGCUUCg -3'
miRNA:   3'- aCCGaCUGCGUA----UCA-----GUUCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 28517 0.7 0.440915
Target:  5'- aGGCggugGACGC---GUCAGGGCGaaUCCg -3'
miRNA:   3'- aCCGa---CUGCGuauCAGUUCCGCg-AGG- -5'
11411 5' -54.6 NC_003085.1 + 2472 0.7 0.440915
Target:  5'- --aCUGACGCAUAGUguggccaucagCGcGGCGCUUCa -3'
miRNA:   3'- accGACUGCGUAUCA-----------GUuCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 33302 0.7 0.440915
Target:  5'- cGGCcaccacGGCGuCAcGGUCAuucAGGCGUUCCg -3'
miRNA:   3'- aCCGa-----CUGC-GUaUCAGU---UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 5259 0.7 0.460993
Target:  5'- aUGGgUGGCGCGUGGU--GGGUGCg-- -3'
miRNA:   3'- -ACCgACUGCGUAUCAguUCCGCGagg -5'
11411 5' -54.6 NC_003085.1 + 39480 0.7 0.471212
Target:  5'- -uGCcGACGUGcgcGUCGAGGCGCUCg -3'
miRNA:   3'- acCGaCUGCGUau-CAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 30653 0.7 0.481544
Target:  5'- gUGGCgaguCGCugcGG-CAGGGCGCUCUg -3'
miRNA:   3'- -ACCGacu-GCGua-UCaGUUCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 21636 0.69 0.487796
Target:  5'- cGGCcaUGGCGCAgggGGUgAAGGCGaaguucggcagcaUCCg -3'
miRNA:   3'- aCCG--ACUGCGUa--UCAgUUCCGCg------------AGG- -5'
11411 5' -54.6 NC_003085.1 + 30337 0.69 0.491985
Target:  5'- cUGGCgGACGCu--GUCGcgGGGCGCa-- -3'
miRNA:   3'- -ACCGaCUGCGuauCAGU--UCCGCGagg -5'
11411 5' -54.6 NC_003085.1 + 32694 0.69 0.50253
Target:  5'- -uGCUGGCGCGUcGUCuGGuaGCGCUCg -3'
miRNA:   3'- acCGACUGCGUAuCAGuUC--CGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 32145 0.69 0.50253
Target:  5'- cGGCUGgugGCGCGgugGGUUAcGGCGUcggCCa -3'
miRNA:   3'- aCCGAC---UGCGUa--UCAGUuCCGCGa--GG- -5'
11411 5' -54.6 NC_003085.1 + 43815 0.69 0.50253
Target:  5'- cGGCgcucGCGCA-AGUCAcaGGGCgagcGCUCCa -3'
miRNA:   3'- aCCGac--UGCGUaUCAGU--UCCG----CGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.