Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11411 | 5' | -54.6 | NC_003085.1 | + | 47013 | 1.13 | 0.000491 |
Target: 5'- gUGGCUGACGCAUAGUCAAGGCGCUCCa -3' miRNA: 3'- -ACCGACUGCGUAUCAGUUCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 632 | 0.89 | 0.024814 |
Target: 5'- aGGCUGGCGCGgaccucGUCGAGGCGCUCg -3' miRNA: 3'- aCCGACUGCGUau----CAGUUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 18970 | 0.76 | 0.219269 |
Target: 5'- cUGGCUGuCGUcgAGUCcAGGCGUcgcgUCCa -3' miRNA: 3'- -ACCGACuGCGuaUCAGuUCCGCG----AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 38248 | 0.73 | 0.300173 |
Target: 5'- gGGCUGACGguUGcacGUCAuGGCGUgCCu -3' miRNA: 3'- aCCGACUGCguAU---CAGUuCCGCGaGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 12021 | 0.73 | 0.31571 |
Target: 5'- gUGGCgGGCGCGgGGUU--GGCGCUCg -3' miRNA: 3'- -ACCGaCUGCGUaUCAGuuCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 38147 | 0.72 | 0.340138 |
Target: 5'- -uGCUGGCGU-UGGUgGuGGCGCUCCc -3' miRNA: 3'- acCGACUGCGuAUCAgUuCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 23408 | 0.72 | 0.365906 |
Target: 5'- aGGCUGA-GCAgcgAGUCAugcaGCGCUUCg -3' miRNA: 3'- aCCGACUgCGUa--UCAGUuc--CGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 28439 | 0.71 | 0.38747 |
Target: 5'- aGGCUGgacauaccgccgccaGgGCGUGGaUUGAGGCGCUCa -3' miRNA: 3'- aCCGAC---------------UgCGUAUC-AGUUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 46643 | 0.71 | 0.39299 |
Target: 5'- gGGCaGACGUGUugccAGUgaugcCGAGGCGCUUCg -3' miRNA: 3'- aCCGaCUGCGUA----UCA-----GUUCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 28517 | 0.7 | 0.440915 |
Target: 5'- aGGCggugGACGC---GUCAGGGCGaaUCCg -3' miRNA: 3'- aCCGa---CUGCGuauCAGUUCCGCg-AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 2472 | 0.7 | 0.440915 |
Target: 5'- --aCUGACGCAUAGUguggccaucagCGcGGCGCUUCa -3' miRNA: 3'- accGACUGCGUAUCA-----------GUuCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 33302 | 0.7 | 0.440915 |
Target: 5'- cGGCcaccacGGCGuCAcGGUCAuucAGGCGUUCCg -3' miRNA: 3'- aCCGa-----CUGC-GUaUCAGU---UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 5259 | 0.7 | 0.460993 |
Target: 5'- aUGGgUGGCGCGUGGU--GGGUGCg-- -3' miRNA: 3'- -ACCgACUGCGUAUCAguUCCGCGagg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 39480 | 0.7 | 0.471212 |
Target: 5'- -uGCcGACGUGcgcGUCGAGGCGCUCg -3' miRNA: 3'- acCGaCUGCGUau-CAGUUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 30653 | 0.7 | 0.481544 |
Target: 5'- gUGGCgaguCGCugcGG-CAGGGCGCUCUg -3' miRNA: 3'- -ACCGacu-GCGua-UCaGUUCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 21636 | 0.69 | 0.487796 |
Target: 5'- cGGCcaUGGCGCAgggGGUgAAGGCGaaguucggcagcaUCCg -3' miRNA: 3'- aCCG--ACUGCGUa--UCAgUUCCGCg------------AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 30337 | 0.69 | 0.491985 |
Target: 5'- cUGGCgGACGCu--GUCGcgGGGCGCa-- -3' miRNA: 3'- -ACCGaCUGCGuauCAGU--UCCGCGagg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 32694 | 0.69 | 0.50253 |
Target: 5'- -uGCUGGCGCGUcGUCuGGuaGCGCUCg -3' miRNA: 3'- acCGACUGCGUAuCAGuUC--CGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 32145 | 0.69 | 0.50253 |
Target: 5'- cGGCUGgugGCGCGgugGGUUAcGGCGUcggCCa -3' miRNA: 3'- aCCGAC---UGCGUa--UCAGUuCCGCGa--GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 43815 | 0.69 | 0.50253 |
Target: 5'- cGGCgcucGCGCA-AGUCAcaGGGCgagcGCUCCa -3' miRNA: 3'- aCCGac--UGCGUaUCAGU--UCCG----CGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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