miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 5' -54.6 NC_003085.1 + 630 0.67 0.668219
Target:  5'- gGGUUG-UGCugcGcCAAGGCGCUCg -3'
miRNA:   3'- aCCGACuGCGuauCaGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 632 0.89 0.024814
Target:  5'- aGGCUGGCGCGgaccucGUCGAGGCGCUCg -3'
miRNA:   3'- aCCGACUGCGUau----CAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 828 0.66 0.712473
Target:  5'- cGGCcugUGGCGCAaGGUgAAGGCauacgGCgCCa -3'
miRNA:   3'- aCCG---ACUGCGUaUCAgUUCCG-----CGaGG- -5'
11411 5' -54.6 NC_003085.1 + 2472 0.7 0.440915
Target:  5'- --aCUGACGCAUAGUguggccaucagCGcGGCGCUUCa -3'
miRNA:   3'- accGACUGCGUAUCA-----------GUuCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 2730 0.67 0.623397
Target:  5'- cGGCUGGCaGCGcgcgCgAAGGCGCUgCCc -3'
miRNA:   3'- aCCGACUG-CGUaucaG-UUCCGCGA-GG- -5'
11411 5' -54.6 NC_003085.1 + 2770 0.66 0.690463
Target:  5'- cUGGCcgGAaGCAggcAG-CGGcGGCGCUCCa -3'
miRNA:   3'- -ACCGa-CUgCGUa--UCaGUU-CCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 5259 0.7 0.460993
Target:  5'- aUGGgUGGCGCGUGGU--GGGUGCg-- -3'
miRNA:   3'- -ACCgACUGCGUAUCAguUCCGCGagg -5'
11411 5' -54.6 NC_003085.1 + 8149 0.66 0.712473
Target:  5'- -aGCgccGCGCAUcaggcgaacgAGUCAAGGUGCUUg -3'
miRNA:   3'- acCGac-UGCGUA----------UCAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 8245 0.67 0.645834
Target:  5'- aGGCUGAgCGCAgcgAGUUccggAGGGUGCcaugagCCc -3'
miRNA:   3'- aCCGACU-GCGUa--UCAG----UUCCGCGa-----GG- -5'
11411 5' -54.6 NC_003085.1 + 11407 0.69 0.534723
Target:  5'- cGGCUGACGCAccGcCGcgguGGCuGCUUCu -3'
miRNA:   3'- aCCGACUGCGUauCaGUu---CCG-CGAGG- -5'
11411 5' -54.6 NC_003085.1 + 11884 0.66 0.690463
Target:  5'- cGcCUGagcGCGCcgAGuUCAuggccAGGCGCUCCa -3'
miRNA:   3'- aCcGAC---UGCGuaUC-AGU-----UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 12021 0.73 0.31571
Target:  5'- gUGGCgGGCGCGgGGUU--GGCGCUCg -3'
miRNA:   3'- -ACCGaCUGCGUaUCAGuuCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 12775 0.67 0.612186
Target:  5'- gGGgUGAUGCcccugccgccGUuGUCGggcAGGUGCUCCa -3'
miRNA:   3'- aCCgACUGCG----------UAuCAGU---UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 13616 0.67 0.612186
Target:  5'- aGGCacaagUGGgGCAcgacugAGUCGcAGGCGCUCg -3'
miRNA:   3'- aCCG-----ACUgCGUa-----UCAGU-UCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 13914 0.69 0.534723
Target:  5'- cGGCgUGcGCGCGUuucGGaCGGGGCGCgcgCCg -3'
miRNA:   3'- aCCG-AC-UGCGUA---UCaGUUCCGCGa--GG- -5'
11411 5' -54.6 NC_003085.1 + 18970 0.76 0.219269
Target:  5'- cUGGCUGuCGUcgAGUCcAGGCGUcgcgUCCa -3'
miRNA:   3'- -ACCGACuGCGuaUCAGuUCCGCG----AGG- -5'
11411 5' -54.6 NC_003085.1 + 21636 0.69 0.487796
Target:  5'- cGGCcaUGGCGCAgggGGUgAAGGCGaaguucggcagcaUCCg -3'
miRNA:   3'- aCCG--ACUGCGUa--UCAgUUCCGCg------------AGG- -5'
11411 5' -54.6 NC_003085.1 + 23408 0.72 0.365906
Target:  5'- aGGCUGA-GCAgcgAGUCAugcaGCGCUUCg -3'
miRNA:   3'- aCCGACUgCGUa--UCAGUuc--CGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 28439 0.71 0.38747
Target:  5'- aGGCUGgacauaccgccgccaGgGCGUGGaUUGAGGCGCUCa -3'
miRNA:   3'- aCCGAC---------------UgCGUAUC-AGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 28517 0.7 0.440915
Target:  5'- aGGCggugGACGC---GUCAGGGCGaaUCCg -3'
miRNA:   3'- aCCGa---CUGCGuauCAGUUCCGCg-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.