miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 5' -54.6 NC_003085.1 + 41810 0.67 0.668219
Target:  5'- aGGCUcGCGCAU-GUC--GGCGCcgCCc -3'
miRNA:   3'- aCCGAcUGCGUAuCAGuuCCGCGa-GG- -5'
11411 5' -54.6 NC_003085.1 + 11407 0.69 0.534723
Target:  5'- cGGCUGACGCAccGcCGcgguGGCuGCUUCu -3'
miRNA:   3'- aCCGACUGCGUauCaGUu---CCG-CGAGG- -5'
11411 5' -54.6 NC_003085.1 + 13914 0.69 0.534723
Target:  5'- cGGCgUGcGCGCGUuucGGaCGGGGCGCgcgCCg -3'
miRNA:   3'- aCCG-AC-UGCGUA---UCaGUUCCGCGa--GG- -5'
11411 5' -54.6 NC_003085.1 + 47736 0.68 0.599874
Target:  5'- gGGCgcgGuGCGCGUAgcGUCGcaauucgacggccAGGCGCUCg -3'
miRNA:   3'- aCCGa--C-UGCGUAU--CAGU-------------UCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 40332 0.68 0.600992
Target:  5'- gGGCUGGCGCGUGccUCAguGGGCGgUg- -3'
miRNA:   3'- aCCGACUGCGUAUc-AGU--UCCGCgAgg -5'
11411 5' -54.6 NC_003085.1 + 13616 0.67 0.612186
Target:  5'- aGGCacaagUGGgGCAcgacugAGUCGcAGGCGCUCg -3'
miRNA:   3'- aCCG-----ACUgCGUa-----UCAGU-UCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 12775 0.67 0.612186
Target:  5'- gGGgUGAUGCcccugccgccGUuGUCGggcAGGUGCUCCa -3'
miRNA:   3'- aCCgACUGCG----------UAuCAGU---UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 8245 0.67 0.645834
Target:  5'- aGGCUGAgCGCAgcgAGUUccggAGGGUGCcaugagCCc -3'
miRNA:   3'- aCCGACU-GCGUa--UCAG----UUCCGCGa-----GG- -5'
11411 5' -54.6 NC_003085.1 + 33109 0.67 0.657039
Target:  5'- cUGGgUGGCGCu--GUCGAa-CGCUCCc -3'
miRNA:   3'- -ACCgACUGCGuauCAGUUccGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 32145 0.69 0.50253
Target:  5'- cGGCUGgugGCGCGgugGGUUAcGGCGUcggCCa -3'
miRNA:   3'- aCCGAC---UGCGUa--UCAGUuCCGCGa--GG- -5'
11411 5' -54.6 NC_003085.1 + 30337 0.69 0.491985
Target:  5'- cUGGCgGACGCu--GUCGcgGGGCGCa-- -3'
miRNA:   3'- -ACCGaCUGCGuauCAGU--UCCGCGagg -5'
11411 5' -54.6 NC_003085.1 + 21636 0.69 0.487796
Target:  5'- cGGCcaUGGCGCAgggGGUgAAGGCGaaguucggcagcaUCCg -3'
miRNA:   3'- aCCG--ACUGCGUa--UCAgUUCCGCg------------AGG- -5'
11411 5' -54.6 NC_003085.1 + 38147 0.72 0.340138
Target:  5'- -uGCUGGCGU-UGGUgGuGGCGCUCCc -3'
miRNA:   3'- acCGACUGCGuAUCAgUuCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 23408 0.72 0.365906
Target:  5'- aGGCUGA-GCAgcgAGUCAugcaGCGCUUCg -3'
miRNA:   3'- aCCGACUgCGUa--UCAGUuc--CGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 28439 0.71 0.38747
Target:  5'- aGGCUGgacauaccgccgccaGgGCGUGGaUUGAGGCGCUCa -3'
miRNA:   3'- aCCGAC---------------UgCGUAUC-AGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 46643 0.71 0.39299
Target:  5'- gGGCaGACGUGUugccAGUgaugcCGAGGCGCUUCg -3'
miRNA:   3'- aCCGaCUGCGUA----UCA-----GUUCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 2472 0.7 0.440915
Target:  5'- --aCUGACGCAUAGUguggccaucagCGcGGCGCUUCa -3'
miRNA:   3'- accGACUGCGUAUCA-----------GUuCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 28517 0.7 0.440915
Target:  5'- aGGCggugGACGC---GUCAGGGCGaaUCCg -3'
miRNA:   3'- aCCGa---CUGCGuauCAGUUCCGCg-AGG- -5'
11411 5' -54.6 NC_003085.1 + 39480 0.7 0.471212
Target:  5'- -uGCcGACGUGcgcGUCGAGGCGCUCg -3'
miRNA:   3'- acCGaCUGCGUau-CAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 30653 0.7 0.481544
Target:  5'- gUGGCgaguCGCugcGG-CAGGGCGCUCUg -3'
miRNA:   3'- -ACCGacu-GCGua-UCaGUUCCGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.