Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11411 | 5' | -54.6 | NC_003085.1 | + | 45913 | 0.68 | 0.578697 |
Target: 5'- cGGCcgccuUGA-GCGUGGUCcaaGGGGCGCacUCCu -3' miRNA: 3'- aCCG-----ACUgCGUAUCAG---UUCCGCG--AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 46302 | 0.68 | 0.578697 |
Target: 5'- cUGGCUGugcGCGCGgaAGUCAGcGaGCGC-CCa -3' miRNA: 3'- -ACCGAC---UGCGUa-UCAGUU-C-CGCGaGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 39731 | 0.69 | 0.545619 |
Target: 5'- cUGGacuccaUGACGCcgAGgacaCAcAGGCGUUCCg -3' miRNA: 3'- -ACCg-----ACUGCGuaUCa---GU-UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 13914 | 0.69 | 0.534723 |
Target: 5'- cGGCgUGcGCGCGUuucGGaCGGGGCGCgcgCCg -3' miRNA: 3'- aCCG-AC-UGCGUA---UCaGUUCCGCGa--GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 11407 | 0.69 | 0.534723 |
Target: 5'- cGGCUGACGCAccGcCGcgguGGCuGCUUCu -3' miRNA: 3'- aCCGACUGCGUauCaGUu---CCG-CGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 35372 | 0.69 | 0.532553 |
Target: 5'- uUGGUaGACGUucucccggcggAGUcCGAGGCGCUCg -3' miRNA: 3'- -ACCGaCUGCGua---------UCA-GUUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 28858 | 0.69 | 0.530386 |
Target: 5'- cGGCUGACGCucaccuuGGGCGUUUg -3' miRNA: 3'- aCCGACUGCGuaucaguUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 43431 | 0.69 | 0.513172 |
Target: 5'- aGGUcauccUGGCGCGgcGUCcGGGCGUacaUCCg -3' miRNA: 3'- aCCG-----ACUGCGUauCAGuUCCGCG---AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 43815 | 0.69 | 0.50253 |
Target: 5'- cGGCgcucGCGCA-AGUCAcaGGGCgagcGCUCCa -3' miRNA: 3'- aCCGac--UGCGUaUCAGU--UCCG----CGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 32694 | 0.69 | 0.50253 |
Target: 5'- -uGCUGGCGCGUcGUCuGGuaGCGCUCg -3' miRNA: 3'- acCGACUGCGUAuCAGuUC--CGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 32145 | 0.69 | 0.50253 |
Target: 5'- cGGCUGgugGCGCGgugGGUUAcGGCGUcggCCa -3' miRNA: 3'- aCCGAC---UGCGUa--UCAGUuCCGCGa--GG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 30337 | 0.69 | 0.491985 |
Target: 5'- cUGGCgGACGCu--GUCGcgGGGCGCa-- -3' miRNA: 3'- -ACCGaCUGCGuauCAGU--UCCGCGagg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 21636 | 0.69 | 0.487796 |
Target: 5'- cGGCcaUGGCGCAgggGGUgAAGGCGaaguucggcagcaUCCg -3' miRNA: 3'- aCCG--ACUGCGUa--UCAgUUCCGCg------------AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 30653 | 0.7 | 0.481544 |
Target: 5'- gUGGCgaguCGCugcGG-CAGGGCGCUCUg -3' miRNA: 3'- -ACCGacu-GCGua-UCaGUUCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 39480 | 0.7 | 0.471212 |
Target: 5'- -uGCcGACGUGcgcGUCGAGGCGCUCg -3' miRNA: 3'- acCGaCUGCGUau-CAGUUCCGCGAGg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 5259 | 0.7 | 0.460993 |
Target: 5'- aUGGgUGGCGCGUGGU--GGGUGCg-- -3' miRNA: 3'- -ACCgACUGCGUAUCAguUCCGCGagg -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 28517 | 0.7 | 0.440915 |
Target: 5'- aGGCggugGACGC---GUCAGGGCGaaUCCg -3' miRNA: 3'- aCCGa---CUGCGuauCAGUUCCGCg-AGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 33302 | 0.7 | 0.440915 |
Target: 5'- cGGCcaccacGGCGuCAcGGUCAuucAGGCGUUCCg -3' miRNA: 3'- aCCGa-----CUGC-GUaUCAGU---UCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 2472 | 0.7 | 0.440915 |
Target: 5'- --aCUGACGCAUAGUguggccaucagCGcGGCGCUUCa -3' miRNA: 3'- accGACUGCGUAUCA-----------GUuCCGCGAGG- -5' |
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11411 | 5' | -54.6 | NC_003085.1 | + | 46643 | 0.71 | 0.39299 |
Target: 5'- gGGCaGACGUGUugccAGUgaugcCGAGGCGCUUCg -3' miRNA: 3'- aCCGaCUGCGUA----UCA-----GUUCCGCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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