miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 5' -54.6 NC_003085.1 + 45913 0.68 0.578697
Target:  5'- cGGCcgccuUGA-GCGUGGUCcaaGGGGCGCacUCCu -3'
miRNA:   3'- aCCG-----ACUgCGUAUCAG---UUCCGCG--AGG- -5'
11411 5' -54.6 NC_003085.1 + 46302 0.68 0.578697
Target:  5'- cUGGCUGugcGCGCGgaAGUCAGcGaGCGC-CCa -3'
miRNA:   3'- -ACCGAC---UGCGUa-UCAGUU-C-CGCGaGG- -5'
11411 5' -54.6 NC_003085.1 + 39731 0.69 0.545619
Target:  5'- cUGGacuccaUGACGCcgAGgacaCAcAGGCGUUCCg -3'
miRNA:   3'- -ACCg-----ACUGCGuaUCa---GU-UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 13914 0.69 0.534723
Target:  5'- cGGCgUGcGCGCGUuucGGaCGGGGCGCgcgCCg -3'
miRNA:   3'- aCCG-AC-UGCGUA---UCaGUUCCGCGa--GG- -5'
11411 5' -54.6 NC_003085.1 + 11407 0.69 0.534723
Target:  5'- cGGCUGACGCAccGcCGcgguGGCuGCUUCu -3'
miRNA:   3'- aCCGACUGCGUauCaGUu---CCG-CGAGG- -5'
11411 5' -54.6 NC_003085.1 + 35372 0.69 0.532553
Target:  5'- uUGGUaGACGUucucccggcggAGUcCGAGGCGCUCg -3'
miRNA:   3'- -ACCGaCUGCGua---------UCA-GUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 28858 0.69 0.530386
Target:  5'- cGGCUGACGCucaccuuGGGCGUUUg -3'
miRNA:   3'- aCCGACUGCGuaucaguUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 43431 0.69 0.513172
Target:  5'- aGGUcauccUGGCGCGgcGUCcGGGCGUacaUCCg -3'
miRNA:   3'- aCCG-----ACUGCGUauCAGuUCCGCG---AGG- -5'
11411 5' -54.6 NC_003085.1 + 43815 0.69 0.50253
Target:  5'- cGGCgcucGCGCA-AGUCAcaGGGCgagcGCUCCa -3'
miRNA:   3'- aCCGac--UGCGUaUCAGU--UCCG----CGAGG- -5'
11411 5' -54.6 NC_003085.1 + 32694 0.69 0.50253
Target:  5'- -uGCUGGCGCGUcGUCuGGuaGCGCUCg -3'
miRNA:   3'- acCGACUGCGUAuCAGuUC--CGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 32145 0.69 0.50253
Target:  5'- cGGCUGgugGCGCGgugGGUUAcGGCGUcggCCa -3'
miRNA:   3'- aCCGAC---UGCGUa--UCAGUuCCGCGa--GG- -5'
11411 5' -54.6 NC_003085.1 + 30337 0.69 0.491985
Target:  5'- cUGGCgGACGCu--GUCGcgGGGCGCa-- -3'
miRNA:   3'- -ACCGaCUGCGuauCAGU--UCCGCGagg -5'
11411 5' -54.6 NC_003085.1 + 21636 0.69 0.487796
Target:  5'- cGGCcaUGGCGCAgggGGUgAAGGCGaaguucggcagcaUCCg -3'
miRNA:   3'- aCCG--ACUGCGUa--UCAgUUCCGCg------------AGG- -5'
11411 5' -54.6 NC_003085.1 + 30653 0.7 0.481544
Target:  5'- gUGGCgaguCGCugcGG-CAGGGCGCUCUg -3'
miRNA:   3'- -ACCGacu-GCGua-UCaGUUCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 39480 0.7 0.471212
Target:  5'- -uGCcGACGUGcgcGUCGAGGCGCUCg -3'
miRNA:   3'- acCGaCUGCGUau-CAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 5259 0.7 0.460993
Target:  5'- aUGGgUGGCGCGUGGU--GGGUGCg-- -3'
miRNA:   3'- -ACCgACUGCGUAUCAguUCCGCGagg -5'
11411 5' -54.6 NC_003085.1 + 28517 0.7 0.440915
Target:  5'- aGGCggugGACGC---GUCAGGGCGaaUCCg -3'
miRNA:   3'- aCCGa---CUGCGuauCAGUUCCGCg-AGG- -5'
11411 5' -54.6 NC_003085.1 + 33302 0.7 0.440915
Target:  5'- cGGCcaccacGGCGuCAcGGUCAuucAGGCGUUCCg -3'
miRNA:   3'- aCCGa-----CUGC-GUaUCAGU---UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 2472 0.7 0.440915
Target:  5'- --aCUGACGCAUAGUguggccaucagCGcGGCGCUUCa -3'
miRNA:   3'- accGACUGCGUAUCA-----------GUuCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 46643 0.71 0.39299
Target:  5'- gGGCaGACGUGUugccAGUgaugcCGAGGCGCUUCg -3'
miRNA:   3'- aCCGaCUGCGUA----UCA-----GUUCCGCGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.