miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11412 5' -57.7 NC_003085.1 + 24388 0.66 0.532447
Target:  5'- cAAUgGCCUGgacGGGGCcgUGCCGgUGGAc -3'
miRNA:   3'- -UUAgCGGGC---UCCCGuaGUGGCgAUCU- -5'
11412 5' -57.7 NC_003085.1 + 892 0.66 0.511249
Target:  5'- --gCGUCCGAgGGGCAUC-CCGUg--- -3'
miRNA:   3'- uuaGCGGGCU-CCCGUAGuGGCGaucu -5'
11412 5' -57.7 NC_003085.1 + 12409 0.67 0.48014
Target:  5'- -cUCGaCCCGgcGGGGCcgCugCGCUccgaGGAg -3'
miRNA:   3'- uuAGC-GGGC--UCCCGuaGugGCGA----UCU- -5'
11412 5' -57.7 NC_003085.1 + 20341 0.67 0.480139
Target:  5'- cAAUCGCCUGGuuccgcgccGCGUCGCCGCUGc- -3'
miRNA:   3'- -UUAGCGGGCUcc-------CGUAGUGGCGAUcu -5'
11412 5' -57.7 NC_003085.1 + 14113 0.67 0.469975
Target:  5'- aAAUCGCCCacugccacGGCAUCACCGUg--- -3'
miRNA:   3'- -UUAGCGGGcuc-----CCGUAGUGGCGaucu -5'
11412 5' -57.7 NC_003085.1 + 23539 0.67 0.468964
Target:  5'- -uUCGCCuucuccaCGAGGGCAcgCACCGgcccaaucuuCUGGAg -3'
miRNA:   3'- uuAGCGG-------GCUCCCGUa-GUGGC----------GAUCU- -5'
11412 5' -57.7 NC_003085.1 + 42498 0.67 0.449983
Target:  5'- ---aGCCaacggaGAGGGCAUCGCUGCc--- -3'
miRNA:   3'- uuagCGGg-----CUCCCGUAGUGGCGaucu -5'
11412 5' -57.7 NC_003085.1 + 7458 0.68 0.375046
Target:  5'- --aUGcCCCGGuGGGCGUCGCgccucaCGCUGGAg -3'
miRNA:   3'- uuaGC-GGGCU-CCCGUAGUG------GCGAUCU- -5'
11412 5' -57.7 NC_003085.1 + 4960 0.68 0.375045
Target:  5'- ---aGCCCGAGGGCGUCuuuUCGUa--- -3'
miRNA:   3'- uuagCGGGCUCCCGUAGu--GGCGaucu -5'
11412 5' -57.7 NC_003085.1 + 46891 0.69 0.366289
Target:  5'- --gUGCCCGuGGGCuugugaaggucGUCACCGCggcAGGc -3'
miRNA:   3'- uuaGCGGGCuCCCG-----------UAGUGGCGa--UCU- -5'
11412 5' -57.7 NC_003085.1 + 25004 0.69 0.349203
Target:  5'- --aCGUCCGcGGuGCAgaaggCGCCGCUGGGc -3'
miRNA:   3'- uuaGCGGGCuCC-CGUa----GUGGCGAUCU- -5'
11412 5' -57.7 NC_003085.1 + 32842 0.69 0.340876
Target:  5'- ---gGCCCGAGaGGCcgcgCGCCGCgGGAc -3'
miRNA:   3'- uuagCGGGCUC-CCGua--GUGGCGaUCU- -5'
11412 5' -57.7 NC_003085.1 + 48988 0.7 0.301414
Target:  5'- -cUCGCCCGuGGGCAccugcaacagCGCCgGCUGGc -3'
miRNA:   3'- uuAGCGGGCuCCCGUa---------GUGG-CGAUCu -5'
11412 5' -57.7 NC_003085.1 + 27099 0.7 0.286646
Target:  5'- --aCGUCCGAGGGCAUCugggacguuuCCGCg--- -3'
miRNA:   3'- uuaGCGGGCUCCCGUAGu---------GGCGaucu -5'
11412 5' -57.7 NC_003085.1 + 4940 0.71 0.279478
Target:  5'- gAGUCGUCCGGcgggugcuGGGCAcCACCGCgcAGAa -3'
miRNA:   3'- -UUAGCGGGCU--------CCCGUaGUGGCGa-UCU- -5'
11412 5' -57.7 NC_003085.1 + 46654 1.07 0.000633
Target:  5'- gAAUCGCCCGAGGGCAUCACCGCUAGAg -3'
miRNA:   3'- -UUAGCGGGCUCCCGUAGUGGCGAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.