miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11413 5' -55.4 NC_003085.1 + 45944 1.09 0.000845
Target:  5'- cUCCUCAAUGACGCUCGCGAGACGCCAg -3'
miRNA:   3'- -AGGAGUUACUGCGAGCGCUCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 30335 0.75 0.222307
Target:  5'- cCCUgGcgGACGCugUCGCGGGGCGCa- -3'
miRNA:   3'- aGGAgUuaCUGCG--AGCGCUCUGCGgu -5'
11413 5' -55.4 NC_003085.1 + 25446 0.73 0.302981
Target:  5'- gUUCUUggUGACGUugUCgGCGAuGACGCCAc -3'
miRNA:   3'- -AGGAGuuACUGCG--AG-CGCU-CUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 28519 0.7 0.432884
Target:  5'- aCCUCGugccaGACGCgCGCGGGGCuCCAu -3'
miRNA:   3'- aGGAGUua---CUGCGaGCGCUCUGcGGU- -5'
11413 5' -55.4 NC_003085.1 + 7638 0.7 0.442639
Target:  5'- -aCUCAuggGGCGCUUGgGcGGCGCCGa -3'
miRNA:   3'- agGAGUua-CUGCGAGCgCuCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 20966 0.7 0.442639
Target:  5'- gCCUgAAUGGCGCgCGCGuuGCGCg- -3'
miRNA:   3'- aGGAgUUACUGCGaGCGCucUGCGgu -5'
11413 5' -55.4 NC_003085.1 + 17525 0.7 0.452517
Target:  5'- uUCCUCAucgggAUGGgGCUCGC-AGuCGCCu -3'
miRNA:   3'- -AGGAGU-----UACUgCGAGCGcUCuGCGGu -5'
11413 5' -55.4 NC_003085.1 + 14920 0.69 0.48182
Target:  5'- gCCggcUggUGGCGCUCGCGGccgcuguguugcuGACGCUg -3'
miRNA:   3'- aGGa--GuuACUGCGAGCGCU-------------CUGCGGu -5'
11413 5' -55.4 NC_003085.1 + 41948 0.69 0.493175
Target:  5'- gUCCUCGucgGUGAuguccugcaacCGCUCGaCGcGGACGCCc -3'
miRNA:   3'- -AGGAGU---UACU-----------GCGAGC-GC-UCUGCGGu -5'
11413 5' -55.4 NC_003085.1 + 978 0.69 0.514124
Target:  5'- -gCUCAAcgaGGCGCUUGcCGAGAgcaCGCCAa -3'
miRNA:   3'- agGAGUUa--CUGCGAGC-GCUCU---GCGGU- -5'
11413 5' -55.4 NC_003085.1 + 34652 0.68 0.524735
Target:  5'- cUCCgCGAUGGC-CUCGCGgaGGAUGUCGg -3'
miRNA:   3'- -AGGaGUUACUGcGAGCGC--UCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 16969 0.68 0.546196
Target:  5'- uUCCacgaGAUGACGCUC-CGGgcccgcGACGCCGa -3'
miRNA:   3'- -AGGag--UUACUGCGAGcGCU------CUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 21605 0.68 0.557033
Target:  5'- --aUCAugcGUGGCGCgagcgacccgCGCGAGACgGCCAu -3'
miRNA:   3'- aggAGU---UACUGCGa---------GCGCUCUG-CGGU- -5'
11413 5' -55.4 NC_003085.1 + 47857 0.68 0.557033
Target:  5'- aUCCggGGUGAgGUcgaGCGAGACGUCAg -3'
miRNA:   3'- -AGGagUUACUgCGag-CGCUCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 22337 0.68 0.572304
Target:  5'- aUCCgCAGgccaggaauggaggGAUGC-CGUGAGGCGCCGc -3'
miRNA:   3'- -AGGaGUUa-------------CUGCGaGCGCUCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 36727 0.67 0.589875
Target:  5'- cCCUCA--GACGCUCGgGGuauGCGCUAc -3'
miRNA:   3'- aGGAGUuaCUGCGAGCgCUc--UGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 1302 0.67 0.589875
Target:  5'- aUCCUCAA--GCGUgaGCGcGACGCCGc -3'
miRNA:   3'- -AGGAGUUacUGCGagCGCuCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 26552 0.67 0.600906
Target:  5'- aCCg----GAgGCUCG-GAGACGCCGa -3'
miRNA:   3'- aGGaguuaCUgCGAGCgCUCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 20563 0.67 0.600906
Target:  5'- -gCUgGuUGAUGCUCuGCuGAGACGCCu -3'
miRNA:   3'- agGAgUuACUGCGAG-CG-CUCUGCGGu -5'
11413 5' -55.4 NC_003085.1 + 19041 0.67 0.600906
Target:  5'- cUCCUCcagcaagGGCGCUCGCcAGugcCGCCu -3'
miRNA:   3'- -AGGAGuua----CUGCGAGCGcUCu--GCGGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.