miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11414 3' -60.5 NC_003085.1 + 34703 0.66 0.425268
Target:  5'- aGGCGCCggUUGCaUGGcCACGgcggCGCGUg -3'
miRNA:   3'- aCUGCGG--AGCGcACC-GUGCa---GCGCGa -5'
11414 3' -60.5 NC_003085.1 + 11723 0.66 0.416061
Target:  5'- gGACGCCgaccUCGaCGUGGUGCuGUCGagggGCa -3'
miRNA:   3'- aCUGCGG----AGC-GCACCGUG-CAGCg---CGa -5'
11414 3' -60.5 NC_003085.1 + 28605 0.66 0.406976
Target:  5'- -cACGCCggugGUGUGGCGC-UCGCuGCUg -3'
miRNA:   3'- acUGCGGag--CGCACCGUGcAGCG-CGA- -5'
11414 3' -60.5 NC_003085.1 + 39915 0.66 0.389185
Target:  5'- aGAaGCCa-GCGUcGGcCGCGUCGUGCa -3'
miRNA:   3'- aCUgCGGagCGCA-CC-GUGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 23256 0.66 0.389185
Target:  5'- -cGCGCCgccCGCGcacaaGGCGCagcucGUCGCGCa -3'
miRNA:   3'- acUGCGGa--GCGCa----CCGUG-----CAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 15125 0.66 0.416061
Target:  5'- -aGCGCCgcgcCGCGUGGUGCGaCGaGCa -3'
miRNA:   3'- acUGCGGa---GCGCACCGUGCaGCgCGa -5'
11414 3' -60.5 NC_003085.1 + 35410 0.66 0.406976
Target:  5'- aGAUgGCCUCGaCGgacacGC-CGUCGCGCa -3'
miRNA:   3'- aCUG-CGGAGC-GCac---CGuGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 16380 0.66 0.434596
Target:  5'- gUGA-GCCUcCGCG-GGCACGUCcugGCGa- -3'
miRNA:   3'- -ACUgCGGA-GCGCaCCGUGCAG---CGCga -5'
11414 3' -60.5 NC_003085.1 + 20972 0.66 0.434596
Target:  5'- aUGGCGCg-CGCGUuGCGCGUCagcaCGCa -3'
miRNA:   3'- -ACUGCGgaGCGCAcCGUGCAGc---GCGa -5'
11414 3' -60.5 NC_003085.1 + 40987 0.66 0.434596
Target:  5'- -aGCGCCUCgGCGgccuucUGGCGCGUCaUGUa -3'
miRNA:   3'- acUGCGGAG-CGC------ACCGUGCAGcGCGa -5'
11414 3' -60.5 NC_003085.1 + 20048 0.66 0.389185
Target:  5'- cUGA-GCCUcCGCcaugGGCugGcCGCGCUg -3'
miRNA:   3'- -ACUgCGGA-GCGca--CCGugCaGCGCGA- -5'
11414 3' -60.5 NC_003085.1 + 22058 0.67 0.346996
Target:  5'- -uGCGCC-CGCG-GGCAgGUaccaCGCGCg -3'
miRNA:   3'- acUGCGGaGCGCaCCGUgCA----GCGCGa -5'
11414 3' -60.5 NC_003085.1 + 26698 0.67 0.355167
Target:  5'- cGuCGCCacCGCGgcgGGCGuCGUCgGCGCg -3'
miRNA:   3'- aCuGCGGa-GCGCa--CCGU-GCAG-CGCGa -5'
11414 3' -60.5 NC_003085.1 + 9983 0.67 0.380482
Target:  5'- -aGCGCCUCGaCGc-GCACGUCG-GCa -3'
miRNA:   3'- acUGCGGAGC-GCacCGUGCAGCgCGa -5'
11414 3' -60.5 NC_003085.1 + 48972 0.67 0.346187
Target:  5'- -cGCGCCUucaucucCGCGcugaUGGC-CGUCGUGCg -3'
miRNA:   3'- acUGCGGA-------GCGC----ACCGuGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 13799 0.67 0.380482
Target:  5'- gUGACGCCagUCuGCGUGG-AgGUgGCGCc -3'
miRNA:   3'- -ACUGCGG--AG-CGCACCgUgCAgCGCGa -5'
11414 3' -60.5 NC_003085.1 + 14922 0.67 0.338961
Target:  5'- cGGcCGCCagCGCGUGGCGCuccaacUCGCGg- -3'
miRNA:   3'- aCU-GCGGa-GCGCACCGUGc-----AGCGCga -5'
11414 3' -60.5 NC_003085.1 + 15904 0.68 0.308182
Target:  5'- aUGuCGCCgCGCaUGGUcCGUCGUGCg -3'
miRNA:   3'- -ACuGCGGaGCGcACCGuGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 44135 0.68 0.331062
Target:  5'- cUGAcuuCGCCUCcaGCGUGGCcacGCGcUCGCGg- -3'
miRNA:   3'- -ACU---GCGGAG--CGCACCG---UGC-AGCGCga -5'
11414 3' -60.5 NC_003085.1 + 3879 0.68 0.331062
Target:  5'- -cGCGCCcgccgucugUCGCgGUGGCACuGcUCGUGCUg -3'
miRNA:   3'- acUGCGG---------AGCG-CACCGUG-C-AGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.