Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11414 | 3' | -60.5 | NC_003085.1 | + | 15125 | 0.66 | 0.416061 |
Target: 5'- -aGCGCCgcgcCGCGUGGUGCGaCGaGCa -3' miRNA: 3'- acUGCGGa---GCGCACCGUGCaGCgCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 44135 | 0.68 | 0.331062 |
Target: 5'- cUGAcuuCGCCUCcaGCGUGGCcacGCGcUCGCGg- -3' miRNA: 3'- -ACU---GCGGAG--CGCACCG---UGC-AGCGCga -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 14922 | 0.67 | 0.338961 |
Target: 5'- cGGcCGCCagCGCGUGGCGCuccaacUCGCGg- -3' miRNA: 3'- aCU-GCGGa-GCGCACCGUGc-----AGCGCga -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 48972 | 0.67 | 0.346187 |
Target: 5'- -cGCGCCUucaucucCGCGcugaUGGC-CGUCGUGCg -3' miRNA: 3'- acUGCGGA-------GCGC----ACCGuGCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 13799 | 0.67 | 0.380482 |
Target: 5'- gUGACGCCagUCuGCGUGG-AgGUgGCGCc -3' miRNA: 3'- -ACUGCGG--AG-CGCACCgUgCAgCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 23256 | 0.66 | 0.389185 |
Target: 5'- -cGCGCCgccCGCGcacaaGGCGCagcucGUCGCGCa -3' miRNA: 3'- acUGCGGa--GCGCa----CCGUG-----CAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 39915 | 0.66 | 0.389185 |
Target: 5'- aGAaGCCa-GCGUcGGcCGCGUCGUGCa -3' miRNA: 3'- aCUgCGGagCGCA-CC-GUGCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 28605 | 0.66 | 0.406976 |
Target: 5'- -cACGCCggugGUGUGGCGC-UCGCuGCUg -3' miRNA: 3'- acUGCGGag--CGCACCGUGcAGCG-CGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 11723 | 0.66 | 0.416061 |
Target: 5'- gGACGCCgaccUCGaCGUGGUGCuGUCGagggGCa -3' miRNA: 3'- aCUGCGG----AGC-GCACCGUG-CAGCg---CGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 3879 | 0.68 | 0.331062 |
Target: 5'- -cGCGCCcgccgucugUCGCgGUGGCACuGcUCGUGCUg -3' miRNA: 3'- acUGCGG---------AGCG-CACCGUG-C-AGCGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 4205 | 0.68 | 0.331062 |
Target: 5'- gGACGCCgcugaCGCGcGGCGgGUUaCGCUg -3' miRNA: 3'- aCUGCGGa----GCGCaCCGUgCAGcGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 833 | 0.68 | 0.331062 |
Target: 5'- aGGuCGUCgagCGCGUcucuCACGUCGCGCUg -3' miRNA: 3'- aCU-GCGGa--GCGCAcc--GUGCAGCGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 20628 | 0.71 | 0.210207 |
Target: 5'- cGGCGCUUCGCGgacgcGGacgaugacguggcuCGCGUCGCGUc -3' miRNA: 3'- aCUGCGGAGCGCa----CC--------------GUGCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 29732 | 0.7 | 0.234084 |
Target: 5'- cGGCGUCgUCGCccaggacGUGGCcgcCGUCGCGCc -3' miRNA: 3'- aCUGCGG-AGCG-------CACCGu--GCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 40764 | 0.69 | 0.266095 |
Target: 5'- uUGG-GCCUCGUGUGGCugACGUUG-GCg -3' miRNA: 3'- -ACUgCGGAGCGCACCG--UGCAGCgCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 8927 | 0.69 | 0.272773 |
Target: 5'- cGACGCCUccgaagugcagCGCGUGGCcaaccUGCGCUg -3' miRNA: 3'- aCUGCGGA-----------GCGCACCGugca-GCGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 45082 | 0.69 | 0.28583 |
Target: 5'- --cCGCCguccacaacuccuUCGCGUGGUccAgGUCGCGCg -3' miRNA: 3'- acuGCGG-------------AGCGCACCG--UgCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 15904 | 0.68 | 0.308182 |
Target: 5'- aUGuCGCCgCGCaUGGUcCGUCGUGCg -3' miRNA: 3'- -ACuGCGGaGCGcACCGuGCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 27909 | 0.68 | 0.323299 |
Target: 5'- aUGGC-CCUCGCG-GGC-CG-CGCGUg -3' miRNA: 3'- -ACUGcGGAGCGCaCCGuGCaGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 16995 | 0.68 | 0.324069 |
Target: 5'- cGACGCCgacggcgacgagaagCGCGgaugGGCGCugcUCGCGUa -3' miRNA: 3'- aCUGCGGa--------------GCGCa---CCGUGc--AGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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