miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11414 3' -60.5 NC_003085.1 + 15125 0.66 0.416061
Target:  5'- -aGCGCCgcgcCGCGUGGUGCGaCGaGCa -3'
miRNA:   3'- acUGCGGa---GCGCACCGUGCaGCgCGa -5'
11414 3' -60.5 NC_003085.1 + 44135 0.68 0.331062
Target:  5'- cUGAcuuCGCCUCcaGCGUGGCcacGCGcUCGCGg- -3'
miRNA:   3'- -ACU---GCGGAG--CGCACCG---UGC-AGCGCga -5'
11414 3' -60.5 NC_003085.1 + 14922 0.67 0.338961
Target:  5'- cGGcCGCCagCGCGUGGCGCuccaacUCGCGg- -3'
miRNA:   3'- aCU-GCGGa-GCGCACCGUGc-----AGCGCga -5'
11414 3' -60.5 NC_003085.1 + 48972 0.67 0.346187
Target:  5'- -cGCGCCUucaucucCGCGcugaUGGC-CGUCGUGCg -3'
miRNA:   3'- acUGCGGA-------GCGC----ACCGuGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 13799 0.67 0.380482
Target:  5'- gUGACGCCagUCuGCGUGG-AgGUgGCGCc -3'
miRNA:   3'- -ACUGCGG--AG-CGCACCgUgCAgCGCGa -5'
11414 3' -60.5 NC_003085.1 + 23256 0.66 0.389185
Target:  5'- -cGCGCCgccCGCGcacaaGGCGCagcucGUCGCGCa -3'
miRNA:   3'- acUGCGGa--GCGCa----CCGUG-----CAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 39915 0.66 0.389185
Target:  5'- aGAaGCCa-GCGUcGGcCGCGUCGUGCa -3'
miRNA:   3'- aCUgCGGagCGCA-CC-GUGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 28605 0.66 0.406976
Target:  5'- -cACGCCggugGUGUGGCGC-UCGCuGCUg -3'
miRNA:   3'- acUGCGGag--CGCACCGUGcAGCG-CGA- -5'
11414 3' -60.5 NC_003085.1 + 11723 0.66 0.416061
Target:  5'- gGACGCCgaccUCGaCGUGGUGCuGUCGagggGCa -3'
miRNA:   3'- aCUGCGG----AGC-GCACCGUG-CAGCg---CGa -5'
11414 3' -60.5 NC_003085.1 + 3879 0.68 0.331062
Target:  5'- -cGCGCCcgccgucugUCGCgGUGGCACuGcUCGUGCUg -3'
miRNA:   3'- acUGCGG---------AGCG-CACCGUG-C-AGCGCGA- -5'
11414 3' -60.5 NC_003085.1 + 4205 0.68 0.331062
Target:  5'- gGACGCCgcugaCGCGcGGCGgGUUaCGCUg -3'
miRNA:   3'- aCUGCGGa----GCGCaCCGUgCAGcGCGA- -5'
11414 3' -60.5 NC_003085.1 + 833 0.68 0.331062
Target:  5'- aGGuCGUCgagCGCGUcucuCACGUCGCGCUg -3'
miRNA:   3'- aCU-GCGGa--GCGCAcc--GUGCAGCGCGA- -5'
11414 3' -60.5 NC_003085.1 + 20628 0.71 0.210207
Target:  5'- cGGCGCUUCGCGgacgcGGacgaugacguggcuCGCGUCGCGUc -3'
miRNA:   3'- aCUGCGGAGCGCa----CC--------------GUGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 29732 0.7 0.234084
Target:  5'- cGGCGUCgUCGCccaggacGUGGCcgcCGUCGCGCc -3'
miRNA:   3'- aCUGCGG-AGCG-------CACCGu--GCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 40764 0.69 0.266095
Target:  5'- uUGG-GCCUCGUGUGGCugACGUUG-GCg -3'
miRNA:   3'- -ACUgCGGAGCGCACCG--UGCAGCgCGa -5'
11414 3' -60.5 NC_003085.1 + 8927 0.69 0.272773
Target:  5'- cGACGCCUccgaagugcagCGCGUGGCcaaccUGCGCUg -3'
miRNA:   3'- aCUGCGGA-----------GCGCACCGugca-GCGCGA- -5'
11414 3' -60.5 NC_003085.1 + 45082 0.69 0.28583
Target:  5'- --cCGCCguccacaacuccuUCGCGUGGUccAgGUCGCGCg -3'
miRNA:   3'- acuGCGG-------------AGCGCACCG--UgCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 15904 0.68 0.308182
Target:  5'- aUGuCGCCgCGCaUGGUcCGUCGUGCg -3'
miRNA:   3'- -ACuGCGGaGCGcACCGuGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 27909 0.68 0.323299
Target:  5'- aUGGC-CCUCGCG-GGC-CG-CGCGUg -3'
miRNA:   3'- -ACUGcGGAGCGCaCCGuGCaGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 16995 0.68 0.324069
Target:  5'- cGACGCCgacggcgacgagaagCGCGgaugGGCGCugcUCGCGUa -3'
miRNA:   3'- aCUGCGGa--------------GCGCa---CCGUGc--AGCGCGa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.