miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11416 5' -54 NC_003085.1 + 8160 0.66 0.804816
Target:  5'- cGGugGGcGUGagGUCGucgaAGAgCCGCugGGc -3'
miRNA:   3'- -CCugCC-CACa-UAGU----UCU-GGCGugCCc -5'
11416 5' -54 NC_003085.1 + 10155 0.66 0.775491
Target:  5'- cGGCGGGgaGUAcCGcgaGGACCGgGCGGa -3'
miRNA:   3'- cCUGCCCa-CAUaGU---UCUGGCgUGCCc -5'
11416 5' -54 NC_003085.1 + 6426 0.67 0.765406
Target:  5'- gGGGCagGGGUGg--CGAGGa-GUACGGGa -3'
miRNA:   3'- -CCUG--CCCACauaGUUCUggCGUGCCC- -5'
11416 5' -54 NC_003085.1 + 42874 0.67 0.731219
Target:  5'- cGGcCGGGggcGUGUCGAGGgugaggccgaggucCUGCGCGuGGa -3'
miRNA:   3'- -CCuGCCCa--CAUAGUUCU--------------GGCGUGC-CC- -5'
11416 5' -54 NC_003085.1 + 42572 0.67 0.723816
Target:  5'- cGGuCGGGgagcGUAUCGGGGCuaucuucgggCGgACGGGu -3'
miRNA:   3'- -CCuGCCCa---CAUAGUUCUG----------GCgUGCCC- -5'
11416 5' -54 NC_003085.1 + 11513 0.67 0.713163
Target:  5'- -uGCGGGUGUGgugCGGuuaccGGCCGCGCGu- -3'
miRNA:   3'- ccUGCCCACAUa--GUU-----CUGGCGUGCcc -5'
11416 5' -54 NC_003085.1 + 39456 0.67 0.712093
Target:  5'- cGGGCGGcaaUGUGUCGugugagucggcguAGGCCGUcaGCGGa -3'
miRNA:   3'- -CCUGCCc--ACAUAGU-------------UCUGGCG--UGCCc -5'
11416 5' -54 NC_003085.1 + 48750 0.67 0.70995
Target:  5'- aGGcGCGGGUGgaccugcUC-AGGCCGCgcccgaggccggacGCGGGa -3'
miRNA:   3'- -CC-UGCCCACau-----AGuUCUGGCG--------------UGCCC- -5'
11416 5' -54 NC_003085.1 + 1392 0.68 0.691629
Target:  5'- gGGACGaGGUGUAU-GAGAgCGUcCGGa -3'
miRNA:   3'- -CCUGC-CCACAUAgUUCUgGCGuGCCc -5'
11416 5' -54 NC_003085.1 + 19308 0.68 0.691629
Target:  5'- uGGCGGGgGUgacGUCcugcguGGGCUGCugGGGc -3'
miRNA:   3'- cCUGCCCaCA---UAGu-----UCUGGCGugCCC- -5'
11416 5' -54 NC_003085.1 + 27611 0.68 0.669867
Target:  5'- cGGccuGCGcGGUGUGUgGAGccuggggggcucGCCGCcaGCGGGa -3'
miRNA:   3'- -CC---UGC-CCACAUAgUUC------------UGGCG--UGCCC- -5'
11416 5' -54 NC_003085.1 + 34196 0.69 0.636985
Target:  5'- cGGCGGGUGag-CucGGCCGCGgccucCGGGu -3'
miRNA:   3'- cCUGCCCACauaGuuCUGGCGU-----GCCC- -5'
11416 5' -54 NC_003085.1 + 16699 0.69 0.604062
Target:  5'- aGGGCGGG-GgcUUggGGCuUGCgACGGGu -3'
miRNA:   3'- -CCUGCCCaCauAGuuCUG-GCG-UGCCC- -5'
11416 5' -54 NC_003085.1 + 4186 0.7 0.538022
Target:  5'- cGGACGGGUGUGaCGGGuccaACCucaccaccgaagcGCACGcGGa -3'
miRNA:   3'- -CCUGCCCACAUaGUUC----UGG-------------CGUGC-CC- -5'
11416 5' -54 NC_003085.1 + 43036 0.71 0.517923
Target:  5'- --cCGGGccGUGUCGAGcggcCCGCugGGGa -3'
miRNA:   3'- ccuGCCCa-CAUAGUUCu---GGCGugCCC- -5'
11416 5' -54 NC_003085.1 + 44919 1.14 0.000716
Target:  5'- cGGACGGGUGUAUCAAGACCGCACGGGa -3'
miRNA:   3'- -CCUGCCCACAUAGUUCUGGCGUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.