Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11417 | 3' | -54.8 | NC_003085.1 | + | 46455 | 0.66 | 0.703367 |
Target: 5'- gGCGUCguccGUGCGCCCaG-CGGGgaGCg -3' miRNA: 3'- gUGCGGa---CAUGCGGGaCaGUCCauUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 10961 | 0.66 | 0.681264 |
Target: 5'- uGCGCUcGU--GCCCUgGUCAGGgcgGACg -3' miRNA: 3'- gUGCGGaCAugCGGGA-CAGUCCa--UUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 45909 | 0.66 | 0.670134 |
Target: 5'- -uCGCCgUGUGCGCCCaGagAGGcAGCc -3' miRNA: 3'- guGCGG-ACAUGCGGGaCagUCCaUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 34738 | 0.66 | 0.658967 |
Target: 5'- -uCGCCaGcacgACGuCCCUGUCGGGcUGGCc -3' miRNA: 3'- guGCGGaCa---UGC-GGGACAGUCC-AUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 22758 | 0.67 | 0.647774 |
Target: 5'- cCGCGCCgacgACGCCC-GcCGcGGUGGCg -3' miRNA: 3'- -GUGCGGaca-UGCGGGaCaGU-CCAUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 3867 | 0.67 | 0.625354 |
Target: 5'- gCGCGUCgacgGcGCGCCCgccgucUGUCGcGGUGGCa -3' miRNA: 3'- -GUGCGGa---CaUGCGGG------ACAGU-CCAUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 20087 | 0.67 | 0.625354 |
Target: 5'- aCGCGCgCUGUgACGUgCCg--CAGGUGGCg -3' miRNA: 3'- -GUGCG-GACA-UGCG-GGacaGUCCAUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 25914 | 0.67 | 0.614148 |
Target: 5'- cCGCGCCgagcaGCGCCCUGg-AGG-AGCa -3' miRNA: 3'- -GUGCGGaca--UGCGGGACagUCCaUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 9723 | 0.68 | 0.580667 |
Target: 5'- aACGCCUGUGUGUCCUcggcgucauggaGUcCAGGgcGCg -3' miRNA: 3'- gUGCGGACAUGCGGGA------------CA-GUCCauUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 28356 | 0.68 | 0.569583 |
Target: 5'- cCACaCCUc--CGCCCUGUCccagGGGUGGCa -3' miRNA: 3'- -GUGcGGAcauGCGGGACAG----UCCAUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 37964 | 0.68 | 0.558552 |
Target: 5'- aACGCCaucugGUGCGCCaUGUCAGcGUcugcGGCg -3' miRNA: 3'- gUGCGGa----CAUGCGGgACAGUC-CA----UUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 5873 | 0.68 | 0.541032 |
Target: 5'- aGCGCCUGcgaccucugccgugGCGCCggGUC-GGUGACg -3' miRNA: 3'- gUGCGGACa-------------UGCGGgaCAGuCCAUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 22596 | 0.69 | 0.504463 |
Target: 5'- gGCGCCggcagGUGCGCcuCCUGaaucgaGGGUGGCg -3' miRNA: 3'- gUGCGGa----CAUGCG--GGACag----UCCAUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 49443 | 0.69 | 0.483455 |
Target: 5'- aGCGCCcaUGUACGCCCUccuuaGUguGGUu-- -3' miRNA: 3'- gUGCGG--ACAUGCGGGA-----CAguCCAuug -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 21558 | 0.72 | 0.341769 |
Target: 5'- gGCGCgaGcucguggACGCCCUGcacCAGGUGACg -3' miRNA: 3'- gUGCGgaCa------UGCGGGACa--GUCCAUUG- -5' |
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11417 | 3' | -54.8 | NC_003085.1 | + | 44607 | 1.1 | 0.000738 |
Target: 5'- cCACGCCUGUACGCCCUGUCAGGUAACa -3' miRNA: 3'- -GUGCGGACAUGCGGGACAGUCCAUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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