Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11418 | 3' | -58.3 | NC_003085.1 | + | 11224 | 0.69 | 0.354373 |
Target: 5'- gGUGGccACcGCCGAcGUgCUGCCGUCGAGa -3' miRNA: 3'- -CAUC--UGcCGGCU-CAgGGCGGUAGCUC- -5' |
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11418 | 3' | -58.3 | NC_003085.1 | + | 17186 | 0.7 | 0.314525 |
Target: 5'- --uGACGGgagaCGAGUCCCggGCCAcCGAGg -3' miRNA: 3'- cauCUGCCg---GCUCAGGG--CGGUaGCUC- -5' |
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11418 | 3' | -58.3 | NC_003085.1 | + | 21087 | 0.73 | 0.210045 |
Target: 5'- -aGGACGGCC-AGUCCUGCCAccccUGGGa -3' miRNA: 3'- caUCUGCCGGcUCAGGGCGGUa---GCUC- -5' |
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11418 | 3' | -58.3 | NC_003085.1 | + | 7758 | 0.73 | 0.204623 |
Target: 5'- -aGGACGGCCGuGUCaucaGCCAUCGu- -3' miRNA: 3'- caUCUGCCGGCuCAGgg--CGGUAGCuc -5' |
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11418 | 3' | -58.3 | NC_003085.1 | + | 43756 | 1.09 | 0.000473 |
Target: 5'- aGUAGACGGCCGAGUCCCGCCAUCGAGg -3' miRNA: 3'- -CAUCUGCCGGCUCAGGGCGGUAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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