miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 3' -55.9 NC_003085.1 + 29393 0.66 0.66622
Target:  5'- cGcGCGUGGAAGcGGaugucccGCuCCAGGAGggcGCGg -3'
miRNA:   3'- aC-CGCAUCUUC-CU-------CG-GGUCCUCa--UGC- -5'
11419 3' -55.9 NC_003085.1 + 9739 0.66 0.645206
Target:  5'- cGGCGUcau-GGAGUCCAGG-GcGCGc -3'
miRNA:   3'- aCCGCAucuuCCUCGGGUCCuCaUGC- -5'
11419 3' -55.9 NC_003085.1 + 5496 0.66 0.645206
Target:  5'- cGGCGUGGGgccGGGCCgugaGGGAGcACGu -3'
miRNA:   3'- aCCGCAUCUuc-CUCGGg---UCCUCaUGC- -5'
11419 3' -55.9 NC_003085.1 + 43634 0.67 0.605327
Target:  5'- gGGCacGGGAGGccauccgccuccagcAGCCCGGGGG-GCGg -3'
miRNA:   3'- aCCGcaUCUUCC---------------UCGGGUCCUCaUGC- -5'
11419 3' -55.9 NC_003085.1 + 9159 0.67 0.600906
Target:  5'- cGGCGaggUAGAGGGcgacgcuGCCCAGGccgGCGc -3'
miRNA:   3'- aCCGC---AUCUUCCu------CGGGUCCucaUGC- -5'
11419 3' -55.9 NC_003085.1 + 28960 0.67 0.56793
Target:  5'- gGGCcucccaacaGUGGAcgcAGGGGCCCAacGGcAGUugGg -3'
miRNA:   3'- aCCG---------CAUCU---UCCUCGGGU--CC-UCAugC- -5'
11419 3' -55.9 NC_003085.1 + 18817 0.67 0.557033
Target:  5'- gUGGCGaAGguGGA-CCCugAGGAGUACu -3'
miRNA:   3'- -ACCGCaUCuuCCUcGGG--UCCUCAUGc -5'
11419 3' -55.9 NC_003085.1 + 27620 0.67 0.557033
Target:  5'- cGGUGUGu--GGAGCCUGGGGGgcuCGc -3'
miRNA:   3'- aCCGCAUcuuCCUCGGGUCCUCau-GC- -5'
11419 3' -55.9 NC_003085.1 + 49058 0.67 0.555946
Target:  5'- cUGGCGUccAGGGAGCgCAGGcgcuugccguagaGGUACu -3'
miRNA:   3'- -ACCGCAucUUCCUCGgGUCC-------------UCAUGc -5'
11419 3' -55.9 NC_003085.1 + 42088 0.68 0.518358
Target:  5'- gGGCGccgucggccucguacUGGAGcGGcGCCCAGGGGcGCGu -3'
miRNA:   3'- aCCGC---------------AUCUU-CCuCGGGUCCUCaUGC- -5'
11419 3' -55.9 NC_003085.1 + 11607 0.68 0.503602
Target:  5'- gGGCGgcgcGAAGGGGCUgugCAGGGGcUGCu -3'
miRNA:   3'- aCCGCau--CUUCCUCGG---GUCCUC-AUGc -5'
11419 3' -55.9 NC_003085.1 + 39102 0.68 0.490066
Target:  5'- cGGgGUuGAGGGAGCguccgcggugccucCCGGGAGgcgACGu -3'
miRNA:   3'- aCCgCAuCUUCCUCG--------------GGUCCUCa--UGC- -5'
11419 3' -55.9 NC_003085.1 + 19068 0.69 0.442639
Target:  5'- cGGCGgAGcAGGcgccgGGCCCGgacGGAGUGCGc -3'
miRNA:   3'- aCCGCaUCuUCC-----UCGGGU---CCUCAUGC- -5'
11419 3' -55.9 NC_003085.1 + 9275 0.73 0.258096
Target:  5'- uUGGCGgggaugAGggGGguaaucaugagaugGGCUCAGGGGUugGa -3'
miRNA:   3'- -ACCGCa-----UCuuCC--------------UCGGGUCCUCAugC- -5'
11419 3' -55.9 NC_003085.1 + 7120 0.74 0.234358
Target:  5'- gGGCGgcGAAGGaAGUCCAGGAugcugGCGa -3'
miRNA:   3'- aCCGCauCUUCC-UCGGGUCCUca---UGC- -5'
11419 3' -55.9 NC_003085.1 + 16306 0.75 0.210787
Target:  5'- aGGCGccauGAcGGGAugGCCCGGGAGUugGg -3'
miRNA:   3'- aCCGCau--CU-UCCU--CGGGUCCUCAugC- -5'
11419 3' -55.9 NC_003085.1 + 42999 1.1 0.000644
Target:  5'- uUGGCGUAGAAGGAGCCCAGGAGUACGg -3'
miRNA:   3'- -ACCGCAUCUUCCUCGGGUCCUCAUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.